| Back to Mac ARM64 build report for BioC 3.17 | 
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This page was generated on 2023-03-16 11:02:07 -0400 (Thu, 16 Mar 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4115 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| To the developers/maintainers of the OmicsLonDA package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 1397/2189 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmicsLonDA 1.15.0  (landing page) Ahmed A. Metwally 
 | kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK |  | |||||||
| Package: OmicsLonDA | 
| Version: 1.15.0 | 
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OmicsLonDA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OmicsLonDA_1.15.0.tar.gz | 
| StartedAt: 2023-03-14 09:07:38 -0400 (Tue, 14 Mar 2023) | 
| EndedAt: 2023-03-14 09:09:08 -0400 (Tue, 14 Mar 2023) | 
| EllapsedTime: 90.6 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: OmicsLonDA.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OmicsLonDA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OmicsLonDA_1.15.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/OmicsLonDA.Rcheck’
* using R Under development (unstable) (2023-01-10 r83596)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 13.0.0 (clang-1300.0.29.3)
    GNU Fortran (GCC) 12.0.1 20220312 (experimental)
* running under: macOS Monterey 12.6.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmicsLonDA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OmicsLonDA’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmicsLonDA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
OmicsLonDA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OmicsLonDA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘OmicsLonDA’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OmicsLonDA)
OmicsLonDA.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(OmicsLonDA)
> 
> test_check("OmicsLonDA")
[1] "Disease" "Healthy"
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
> 
> proc.time()
   user  system elapsed 
  7.092   0.234   7.320 
OmicsLonDA.Rcheck/OmicsLonDA-Ex.timings
| name | user | system | elapsed | |
| adjustBaseline | 0.963 | 0.020 | 0.983 | |
| curveFitting | 1.065 | 0.020 | 1.087 | |
| findSigInterval | 0.055 | 0.003 | 0.059 | |
| omicslonda | 3.958 | 0.127 | 4.085 | |
| permutationMC | 3.549 | 0.090 | 3.639 | |
| testStat | 0.102 | 0.003 | 0.106 | |
| testStatPermutation | 3.578 | 0.105 | 3.683 | |
| visualizeArea | 0.547 | 0.029 | 0.579 | |
| visualizeFeature | 1.241 | 0.020 | 1.261 | |
| visualizeFeatureSpline | 4.518 | 0.080 | 4.597 | |
| visualizeTestStatHistogram | 0.250 | 0.015 | 0.276 | |