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This page was generated on 2023-10-20 09:38:08 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1407/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ODER 1.6.0  (landing page)
David Zhang
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/ODER
git_branch: RELEASE_3_17
git_last_commit: bba2c50
git_last_commit_date: 2023-04-25 11:33:24 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for ODER on kjohnson2


To the developers/maintainers of the ODER package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ODER
Version: 1.6.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ODER
StartedAt: 2023-10-16 12:45:42 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 12:49:11 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 209.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ODER
###
##############################################################################
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* checking for file ‘ODER/DESCRIPTION’ ... OK
* preparing ‘ODER’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ODER_overview.Rmd’ using rmarkdown
Loading required namespace: ODER
trying URL 'https://github.com/leekgroup/recount-website/blob/master/metadata/metadata_clean_gtex.Rdata?raw=true'
Content type 'application/octet-stream' length 2817518 bytes (2.7 MB)
==================================================
downloaded 2.7 MB


Quitting from lines 265-311 [annotatER_example] (ODER_overview.Rmd)
Error: processing vignette 'ODER_overview.Rmd' failed with diagnostics:
error in evaluating the argument 'i' in selecting a method for function '[': could not find function "queryHits"
--- failed re-building ‘ODER_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘ODER_overview.Rmd’

Error: Vignette re-building failed.
Execution halted