Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:06 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 1262/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
MMDiff2 1.28.0 (landing page) Gabriele Schweikert
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
To the developers/maintainers of the MMDiff2 package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: MMDiff2 |
Version: 1.28.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MMDiff2.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MMDiff2_1.28.0.tar.gz |
StartedAt: 2023-10-18 08:28:23 -0400 (Wed, 18 Oct 2023) |
EndedAt: 2023-10-18 08:36:25 -0400 (Wed, 18 Oct 2023) |
EllapsedTime: 481.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: MMDiff2.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MMDiff2.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MMDiff2_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/MMDiff2.Rcheck’ * using R version 4.3.1 (2023-06-16) * using platform: aarch64-apple-darwin20 (64-bit) * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.6.7 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MMDiff2/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘MMDiff2’ version ‘1.28.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MMDiff2’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Namespace in Imports field not imported from: ‘methods’ All declared Imports should be used. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE DBAmmd: no visible global function definition for ‘new’ getReads: no visible global function definition for ‘IRangesList’ Undefined global functions or variables: IRangesList new Consider adding importFrom("methods", "new") to your NAMESPACE file (and ensure that your DESCRIPTION Imports field contains 'methods'). * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed compDists 22.300 3.208 34.457 plotPeak 8.015 0.343 12.788 DBAmmd-Accessors 3.437 0.608 5.412 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/MMDiff2.Rcheck/00check.log’ for details.
MMDiff2.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MMDiff2 ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘MMDiff2’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MMDiff2)
MMDiff2.Rcheck/MMDiff2-Ex.timings
name | user | system | elapsed | |
Cfp1-Peaks | 0.000 | 0.000 | 0.002 | |
DBAmmd-Accessors | 3.437 | 0.608 | 5.412 | |
DBAmmd-class | 0.037 | 0.003 | 0.049 | |
MMD | 0 | 0 | 0 | |
compDists | 22.300 | 3.208 | 34.457 | |
compHists | 3.116 | 0.253 | 4.668 | |
compPvals | 2.151 | 0.111 | 3.198 | |
estimateFragmentCenters | 1.635 | 0.093 | 2.504 | |
getPeakReads | 0.300 | 0.028 | 0.489 | |
mm9-Genes | 0 | 0 | 0 | |
plotDISTS4Peak | 1.312 | 0.089 | 2.070 | |
plotDists | 1.294 | 0.079 | 2.070 | |
plotPeak | 8.015 | 0.343 | 12.788 | |
reportResults | 1.333 | 0.079 | 2.222 | |
runShinyMMDiff2 | 0.000 | 0.000 | 0.001 | |
server.MMDiff2 | 0 | 0 | 0 | |
ui.MMDiff2 | 0.000 | 0.000 | 0.001 | |