| Back to Mac ARM64 build report for BioC 3.17 |
|
This page was generated on 2023-10-20 09:38:04 -0400 (Fri, 20 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 925/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HiCBricks 1.18.0 (landing page) Koustav Pal
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | OK | OK | OK | ||||||||
|
To the developers/maintainers of the HiCBricks package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: HiCBricks |
| Version: 1.18.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.18.0.tar.gz |
| StartedAt: 2023-10-18 00:31:52 -0400 (Wed, 18 Oct 2023) |
| EndedAt: 2023-10-18 00:36:20 -0400 (Wed, 18 Oct 2023) |
| EllapsedTime: 268.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HiCBricks.Rcheck |
| Warnings: 0 |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HiCBricks.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HiCBricks_1.18.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/HiCBricks.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HiCBricks/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HiCBricks’ version ‘1.18.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HiCBricks’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
HiCBricks.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HiCBricks ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘HiCBricks’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HiCBricks)
HiCBricks.Rcheck/HiCBricks-Ex.timings
| name | user | system | elapsed | |
| BrickContainer_change_experiment_name | 1.422 | 0.134 | 2.416 | |
| BrickContainer_change_output_directory | 1.016 | 0.094 | 1.678 | |
| BrickContainer_get_path_to_file | 0.934 | 0.096 | 1.563 | |
| BrickContainer_list_chromosomes | 0.943 | 0.098 | 1.596 | |
| BrickContainer_list_experiment_name | 0.932 | 0.096 | 1.570 | |
| BrickContainer_list_files | 0.949 | 0.098 | 1.617 | |
| BrickContainer_list_output_directory | 0.936 | 0.099 | 1.573 | |
| BrickContainer_list_resolutions | 0.959 | 0.103 | 1.634 | |
| BrickContainer_unlink_resolution | 2.049 | 0.197 | 3.433 | |
| Brick_add_ranges | 2.088 | 0.134 | 3.369 | |
| Brick_call_compartments | 1.540 | 0.181 | 2.611 | |
| Brick_export_to_sparse | 2.976 | 0.286 | 4.945 | |
| Brick_fetch_range_index | 1.149 | 0.101 | 1.907 | |
| Brick_fetch_row_vector | 2.014 | 0.179 | 3.326 | |
| Brick_get_bintable | 0.974 | 0.097 | 1.631 | |
| Brick_get_chrominfo | 0.960 | 0.099 | 1.621 | |
| Brick_get_entire_matrix | 1.341 | 0.203 | 2.356 | |
| Brick_get_matrix | 1.328 | 0.158 | 2.260 | |
| Brick_get_matrix_mcols | 1.289 | 0.188 | 2.270 | |
| Brick_get_matrix_within_coords | 1.864 | 0.174 | 3.073 | |
| Brick_get_ranges | 0.992 | 0.105 | 1.667 | |
| Brick_get_values_by_distance | 1.414 | 0.176 | 2.415 | |
| Brick_get_vector_values | 1.370 | 0.173 | 2.358 | |
| Brick_list_matrices | 0.971 | 0.099 | 1.640 | |
| Brick_list_matrix_mcols | 0.954 | 0.100 | 1.599 | |
| Brick_list_mcool_normalisations | 0.000 | 0.001 | 0.001 | |
| Brick_list_mcool_resolutions | 0.000 | 0.000 | 0.001 | |
| Brick_list_rangekeys | 0.941 | 0.098 | 1.584 | |
| Brick_list_ranges_mcols | 0.924 | 0.095 | 1.506 | |
| Brick_load_cis_matrix_till_distance | 1.197 | 0.148 | 2.058 | |
| Brick_load_data_from_mcool | 0.000 | 0.001 | 0.000 | |
| Brick_load_data_from_sparse | 0.000 | 0.001 | 0.000 | |
| Brick_load_matrix | 1.282 | 0.177 | 2.209 | |
| Brick_local_score_differentiator | 2.012 | 0.225 | 3.398 | |
| Brick_make_ranges | 0.011 | 0.001 | 0.015 | |
| Brick_matrix_dimensions | 1.314 | 0.163 | 2.248 | |
| Brick_matrix_exists | 1.272 | 0.163 | 2.183 | |
| Brick_matrix_filename | 1.327 | 0.159 | 2.275 | |
| Brick_matrix_isdone | 1.286 | 0.158 | 2.199 | |
| Brick_matrix_issparse | 1.269 | 0.155 | 2.169 | |
| Brick_matrix_maxdist | 1.335 | 0.162 | 2.276 | |
| Brick_matrix_minmax | 1.303 | 0.156 | 2.231 | |
| Brick_mcool_normalisation_exists | 0.000 | 0.000 | 0.001 | |
| Brick_rangekey_exists | 0.938 | 0.095 | 1.604 | |
| Brick_return_region_position | 1.087 | 0.100 | 1.793 | |
| Brick_vizart_plot_heatmap | 2.412 | 0.227 | 4.069 | |
| Create_many_Bricks | 0.948 | 0.094 | 1.589 | |
| Create_many_Bricks_from_mcool | 0.000 | 0.000 | 0.001 | |
| load_BrickContainer | 1.003 | 0.095 | 1.664 | |