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This page was generated on 2023-10-20 09:38:03 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 867/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GOsummaries 2.36.0  (landing page)
Raivo Kolde
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/GOsummaries
git_branch: RELEASE_3_17
git_last_commit: 14e96af
git_last_commit_date: 2023-04-25 10:34:30 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for GOsummaries on kjohnson2


To the developers/maintainers of the GOsummaries package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: GOsummaries
Version: 2.36.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GOsummaries
StartedAt: 2023-10-16 05:05:51 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 05:06:20 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 29.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GOsummaries
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* checking for file ‘GOsummaries/DESCRIPTION’ ... OK
* preparing ‘GOsummaries’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GOsummaries-basics.Rnw’ using Sweave
This is vegan 2.6-4
Warning: Please consider using the new package "gprofiler2". At the moment you are using a deprecated package relying on outdated data.
  More information at https://biit.cs.ut.ee/gprofiler/page/r-new. Feel free to contact us at biit.support@ut.ee for further help.

Error: processing vignette 'GOsummaries-basics.Rnw' failed with diagnostics:
 chunk 3 (label = example1) 
Error : INTERNAL SERVER ERROR


--- failed re-building ‘GOsummaries-basics.Rnw’

SUMMARY: processing the following file failed:
  ‘GOsummaries-basics.Rnw’

Error: Vignette re-building failed.
Execution halted