Back to Mac ARM64 build report for BioC 3.17
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-20 09:37:58 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 89/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ArrayExpressHTS 1.50.0  (landing page)
Angela Goncalves , Andrew Tikhonov
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/ArrayExpressHTS
git_branch: RELEASE_3_17
git_last_commit: 7b79d4b
git_last_commit_date: 2023-04-25 10:19:47 -0400 (Tue, 25 Apr 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  ERROR    ERROR  skippedskipped

BUILD results for ArrayExpressHTS on kjohnson2


To the developers/maintainers of the ArrayExpressHTS package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ArrayExpressHTS
Version: 1.50.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ArrayExpressHTS
StartedAt: 2023-10-15 20:50:55 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 20:50:58 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 3.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ArrayExpressHTS
###
##############################################################################
##############################################################################


* checking for file ‘ArrayExpressHTS/DESCRIPTION’ ... OK
* preparing ‘ArrayExpressHTS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘ArrayExpressHTS’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rhtslib/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c addXS.c -o addXS.o
addXS.c:42:5: error: implicit declaration of function 'Rprintf' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
    Rprintf("What?\n");
    ^
1 error generated.
make: *** [addXS.o] Error 1
ERROR: compilation failed for package ‘ArrayExpressHTS’
* removing ‘/private/tmp/RtmpyNsJK1/Rinst47767ccbfc88/ArrayExpressHTS’
      -----------------------------------
ERROR: package installation failed