Saskia Freytag
| Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023) |
| git_url: https://git.bioconductor.org/packages/schex |
| git_branch: RELEASE_3_17 |
| git_last_commit: 49c464a |
| git_last_commit_date: 2023-04-25 11:13:27 -0400 (Tue, 25 Apr 2023) |
| Back to Multiple platform build/check report for BioC 3.17: simplified long |
|
This page was generated on 2023-10-16 11:37:30 -0400 (Mon, 16 Oct 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4626 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" | 4379 |
| merida1 | macOS 12.6.4 Monterey | x86_64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4395 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1840/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| schex 1.14.0 (landing page) Saskia Freytag
| nebbiolo1 | Linux (Ubuntu 22.04.2 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.6.4 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the schex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/schex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: schex |
| Version: 1.14.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data schex |
| StartedAt: 2023-10-15 21:01:40 -0400 (Sun, 15 Oct 2023) |
| EndedAt: 2023-10-15 21:06:26 -0400 (Sun, 15 Oct 2023) |
| EllapsedTime: 286.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data schex
###
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* checking for file ‘schex/DESCRIPTION’ ... OK
* preparing ‘schex’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Seurat_schex.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Seurat_schex", and the latter is "Using schex with Seurat". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘Seurat_schex.Rmd’
--- re-building ‘multi_modal_schex.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "multi_modal_schex", and the latter is "Exploring multi-modal single cell data with schex". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘multi_modal_schex.Rmd’
--- re-building ‘picking_the_right_resolution.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "picking_the_right_resolution", and the latter is "Picking the right resolution". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘picking_the_right_resolution.Rmd’
--- re-building ‘shiny_schex.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "shiny_schhex", and the latter is "Communicating results with schex and shinydashboard or iSEE". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘shiny_schex.Rmd’
--- re-building ‘using_schex.Rmd’ using rmarkdown
2023-10-15 21:06:24.390 R[23074:971846025] XType: com.apple.fonts is not accessible.
2023-10-15 21:06:24.391 R[23074:971846025] XType: XTFontStaticRegistry is enabled.
Quitting from lines 213-216 [unnamed-chunk-2] (using_schex.Rmd)
Error: processing vignette 'using_schex.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 2nd layer.
Caused by error in `match_font_c()`:
! bad value
--- failed re-building ‘using_schex.Rmd’
SUMMARY: processing the following file failed:
‘using_schex.Rmd’
Error: Vignette re-building failed.
Execution halted