##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf alabaster.base.buildbin-libdir && mkdir alabaster.base.buildbin-libdir && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD INSTALL --build --library=alabaster.base.buildbin-libdir alabaster.base_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'alabaster.base' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 12.2.0'
using C++17
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c check_csv.cpp -o check_csv.o
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c check_list.cpp -o check_list.o
In file included from ../inst/include/uzuki2/uzuki2.hpp:14,
                 from check_list.cpp:3:
../inst/include/uzuki2/parse_hdf5.hpp: In instantiation of 'std::shared_ptr<uzuki2::Base> uzuki2::hdf5::parse_inner(const H5::Group&, Externals&, const std::string&) [with Provisioner = uzuki2::DummyProvisioner; Externals = uzuki2::ExternalTracker<uzuki2::DummyExternals>; std::string = std::__cxx11::basic_string<char>]':
../inst/include/uzuki2/parse_hdf5.hpp:442:50:   required from 'std::shared_ptr<uzuki2::Base> uzuki2::Hdf5Parser::parse(const H5::Group&, const std::string&, Externals) [with Provisioner = uzuki2::DummyProvisioner; Externals = uzuki2::DummyExternals; std::string = std::__cxx11::basic_string<char>]'
../inst/include/uzuki2/parse_hdf5.hpp:521:32:   required from here
../inst/include/uzuki2/parse_hdf5.hpp:227:27: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
  227 |         for (int i = 0; i < len; ++i) {
      |                         ~~^~~~~
../inst/include/uzuki2/parse_hdf5.hpp:295:32: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'long long unsigned int' [-Wsign-compare]
  295 |                 if (x < 0 || x >= levlen) {
      |                              ~~^~~~~~~~~
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c load_csv.cpp -o load_csv.o
load_csv.cpp: In instantiation of 'void RFilledField<T, tt, RVector>::add_missing() [with T = std::complex<double>; comservatory::Type tt = comservatory::COMPLEX; RVector = Rcpp::Vector<15>]':
load_csv.cpp:36:10:   required from here
load_csv.cpp:37:22: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   37 |         if (position >= store.size()) {
      |             ~~~~~~~~~^~~~~~~~~~~~~~~
load_csv.cpp: In instantiation of 'void RFilledField<T, tt, RVector>::add_missing() [with T = bool; comservatory::Type tt = comservatory::BOOLEAN; RVector = Rcpp::Vector<10, Rcpp::PreserveStorage>]':
load_csv.cpp:36:10:   required from here
load_csv.cpp:37:22: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
load_csv.cpp: In instantiation of 'void RFilledField<T, tt, RVector>::push_back(T) [with T = bool; comservatory::Type tt = comservatory::BOOLEAN; RVector = Rcpp::Vector<10, Rcpp::PreserveStorage>]':
load_csv.cpp:27:10:   required from here
load_csv.cpp:28:22: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   28 |         if (position >= store.size()) {
      |             ~~~~~~~~~^~~~~~~~~~~~~~~
load_csv.cpp: In instantiation of 'void RFilledField<T, tt, RVector>::add_missing() [with T = double; comservatory::Type tt = comservatory::NUMBER; RVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
load_csv.cpp:36:10:   required from here
load_csv.cpp:37:22: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   37 |         if (position >= store.size()) {
      |             ~~~~~~~~~^~~~~~~~~~~~~~~
load_csv.cpp: In instantiation of 'void RFilledField<T, tt, RVector>::push_back(T) [with T = double; comservatory::Type tt = comservatory::NUMBER; RVector = Rcpp::Vector<14, Rcpp::PreserveStorage>]':
load_csv.cpp:27:10:   required from here
load_csv.cpp:28:22: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   28 |         if (position >= store.size()) {
      |             ~~~~~~~~~^~~~~~~~~~~~~~~
load_csv.cpp: In instantiation of 'void RFilledField<T, tt, RVector>::add_missing() [with T = std::__cxx11::basic_string<char>; comservatory::Type tt = comservatory::STRING; RVector = Rcpp::Vector<16>]':
load_csv.cpp:36:10:   required from here
load_csv.cpp:37:22: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   37 |         if (position >= store.size()) {
      |             ~~~~~~~~~^~~~~~~~~~~~~~~
load_csv.cpp: In instantiation of 'void RFilledField<T, tt, RVector>::push_back(T) [with T = std::__cxx11::basic_string<char>; comservatory::Type tt = comservatory::STRING; RVector = Rcpp::Vector<16>]':
load_csv.cpp:27:10:   required from here
load_csv.cpp:28:22: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'R_xlen_t' {aka 'long long int'} [-Wsign-compare]
   28 |         if (position >= store.size()) {
      |             ~~~~~~~~~^~~~~~~~~~~~~~~
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c load_list.cpp -o load_list.o
In file included from ../inst/include/uzuki2/uzuki2.hpp:14,
                 from load_list.cpp:3:
../inst/include/uzuki2/parse_hdf5.hpp: In instantiation of 'std::shared_ptr<uzuki2::Base> uzuki2::hdf5::parse_inner(const H5::Group&, Externals&, const std::string&) [with Provisioner = uzuki2::DummyProvisioner; Externals = uzuki2::ExternalTracker<uzuki2::DummyExternals>; std::string = std::__cxx11::basic_string<char>]':
../inst/include/uzuki2/parse_hdf5.hpp:442:50:   required from 'std::shared_ptr<uzuki2::Base> uzuki2::Hdf5Parser::parse(const H5::Group&, const std::string&, Externals) [with Provisioner = uzuki2::DummyProvisioner; Externals = uzuki2::DummyExternals; std::string = std::__cxx11::basic_string<char>]'
../inst/include/uzuki2/parse_hdf5.hpp:521:32:   required from here
../inst/include/uzuki2/parse_hdf5.hpp:227:27: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
  227 |         for (int i = 0; i < len; ++i) {
      |                         ~~^~~~~
../inst/include/uzuki2/parse_hdf5.hpp:295:32: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'long long unsigned int' [-Wsign-compare]
  295 |                 if (x < 0 || x >= levlen) {
      |                              ~~^~~~~~~~~
../inst/include/uzuki2/parse_hdf5.hpp: In instantiation of 'std::shared_ptr<uzuki2::Base> uzuki2::hdf5::parse_inner(const H5::Group&, Externals&, const std::string&) [with Provisioner = RProvisioner; Externals = uzuki2::ExternalTracker<RExternals>; std::string = std::__cxx11::basic_string<char>]':
../inst/include/uzuki2/parse_hdf5.hpp:442:50:   required from 'std::shared_ptr<uzuki2::Base> uzuki2::Hdf5Parser::parse(const H5::Group&, const std::string&, Externals) [with Provisioner = RProvisioner; Externals = RExternals; std::string = std::__cxx11::basic_string<char>]'
../inst/include/uzuki2/parse_hdf5.hpp:486:34:   required from 'std::shared_ptr<uzuki2::Base> uzuki2::Hdf5Parser::parse(const std::string&, const std::string&, Externals) [with Provisioner = RProvisioner; Externals = RExternals; std::string = std::__cxx11::basic_string<char>]'
load_list.cpp:288:56:   required from here
../inst/include/uzuki2/parse_hdf5.hpp:227:27: warning: comparison of integer expressions of different signedness: 'int' and 'long long unsigned int' [-Wsign-compare]
  227 |         for (int i = 0; i < len; ++i) {
      |                         ~~^~~~~
../inst/include/uzuki2/parse_hdf5.hpp:295:32: warning: comparison of integer expressions of different signedness: 'int32_t' {aka 'int'} and 'long long unsigned int' [-Wsign-compare]
  295 |                 if (x < 0 || x >= levlen) {
      |                              ~~^~~~~~~~~
g++  -std=gnu++17 -I"F:/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I../inst/include -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/include'   -I"C:/rtools43/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c write_scalar.cpp -o write_scalar.o
g++ -shared -s -static-libgcc -o alabaster.base.dll tmp.def RcppExports.o check_csv.o check_list.o load_csv.o load_list.o write_scalar.o -LF:/biocbuild/bbs-3.17-bioc/R/library/Rhdf5lib/lib/x64-ucrt -lhdf5_cpp -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lsz -laec -lz -lpsapi -lz -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools43/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.17-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.17-bioc/meat/alabaster.base.buildbin-libdir/00LOCK-alabaster.base/00new/alabaster.base/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'alabaster.base' as alabaster.base_1.0.0.zip
* DONE (alabaster.base)