This page was generated on 2023-10-16 11:36:01 -0400 (Mon, 16 Oct 2023).
##############################################################################
##############################################################################
###
### Running command:
###
### chmod a+r CoGAPS -R && F:\biocbuild\bbs-3.17-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CoGAPS
###
##############################################################################
##############################################################################
* checking for file 'CoGAPS/DESCRIPTION' ... OK
* preparing 'CoGAPS':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CoGAPS.Rmd' using rmarkdown
Data Model: Dense, Normal
Sampler Type: Sequential
Loading Data...Done! (00:00:00)
-- Equilibration Phase --
10000 of 50000, Atoms: 74(A), 29(P), ChiSq: 299, Time: 00:00:00 / 00:00:00
20000 of 50000, Atoms: 80(A), 36(P), ChiSq: 163, Time: 00:00:00 / 00:00:00
30000 of 50000, Atoms: 85(A), 40(P), ChiSq: 125, Time: 00:00:00 / 00:00:00
40000 of 50000, Atoms: 86(A), 42(P), ChiSq: 104, Time: 00:00:01 / 00:00:02
50000 of 50000, Atoms: 90(A), 36(P), ChiSq: 114, Time: 00:00:01 / 00:00:02
-- Sampling Phase --
10000 of 50000, Atoms: 85(A), 38(P), ChiSq: 118, Time: 00:00:01 / 00:00:01
20000 of 50000, Atoms: 97(A), 37(P), ChiSq: 112, Time: 00:00:02 / 00:00:02
30000 of 50000, Atoms: 81(A), 36(P), ChiSq: 119, Time: 00:00:02 / 00:00:02
40000 of 50000, Atoms: 84(A), 34(P), ChiSq: 80, Time: 00:00:03 / 00:00:03
50000 of 50000, Atoms: 85(A), 37(P), ChiSq: 113, Time: 00:00:03 / 00:00:03
trying URL 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1'
Content type 'application/octet-stream' length 433262849 bytes (413.2 MB)
=================================================
downloaded 408.1 MB
Quitting from lines 235-240 [load single cell data from zenodo] (CoGAPS.Rmd)
Error: processing vignette 'CoGAPS.Rmd' failed with diagnostics:
download from 'https://zenodo.org/record/7709664/files/inputdata.Rds?download=1' failed
--- failed re-building 'CoGAPS.Rmd'
SUMMARY: processing the following file failed:
'CoGAPS.Rmd'
Error: Vignette re-building failed.
Execution halted