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This page was generated on 2023-10-16 11:35:16 -0400 (Mon, 16 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.2 LTS)x86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4626
palomino3Windows Server 2022 Datacenterx644.3.1 (2023-06-16 ucrt) -- "Beagle Scouts" 4379
merida1macOS 12.6.4 Montereyx86_644.3.1 (2023-06-16) -- "Beagle Scouts" 4395
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 407/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
COMPASS 1.38.1  (landing page)
Greg Finak
Snapshot Date: 2023-10-15 14:00:13 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/COMPASS
git_branch: RELEASE_3_17
git_last_commit: f7a6cd5
git_last_commit_date: 2023-05-01 20:03:56 -0400 (Mon, 01 May 2023)
nebbiolo1Linux (Ubuntu 22.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 12.6.4 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson2macOS 12.6.1 Monterey / arm64see weekly results here

BUILD results for COMPASS on nebbiolo1


To the developers/maintainers of the COMPASS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COMPASS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: COMPASS
Version: 1.38.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
StartedAt: 2023-10-15 16:23:45 -0400 (Sun, 15 Oct 2023)
EndedAt: 2023-10-15 16:27:17 -0400 (Sun, 15 Oct 2023)
EllapsedTime: 212.1 seconds
RetCode: 0
Status:   OK  
PackageFile: COMPASS_1.38.1.tar.gz
PackageFileSize: 1.233 MiB

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
###
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* checking for file ‘COMPASS/DESCRIPTION’ ... OK
* preparing ‘COMPASS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
Warning in system2(command, args, stdout = NULL, stderr = NULL, ...) :
  error in running command
* installing the package to build vignettes
* creating vignettes ... OK
* cleaning src
* running ‘cleanup’
Warning in system2(command, args, stdout = NULL, stderr = NULL, ...) :
  error in running command
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
WARNING: directory ‘COMPASS/examples’ is empty
WARNING: directory ‘COMPASS/incubator’ is empty
WARNING: directory ‘COMPASS/internal’ is empty
WARNING: directory ‘COMPASS/refactor’ is empty
WARNING: directory ‘COMPASS/scratch’ is empty
* building ‘COMPASS_1.38.1.tar.gz’