Back to Workflows build report for BioC 3.16

This page was generated on 2023-04-11 14:00:08 -0400 (Tue, 11 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.5 LTS)x86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4502
palomino4Windows Server 2022 Datacenterx644.2.3 (2023-03-15 ucrt) -- "Shortstop Beagle" 4282
lconwaymacOS 12.5.1 Montereyx86_644.2.3 (2023-03-15) -- "Shortstop Beagle" 4310
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for TCGAWorkflow on lconway


To the developers/maintainers of the TCGAWorkflow package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 27/28HostnameOS / ArchINSTALLBUILD
TCGAWorkflow 1.22.2  (landing page)
Tiago Chedraoui Silva
Snapshot Date: 2023-04-11 10:45:01 -0400 (Tue, 11 Apr 2023)
git_url: https://git.bioconductor.org/packages/TCGAWorkflow
git_branch: RELEASE_3_16
git_last_commit: 2d6966e
git_last_commit_date: 2023-01-12 14:38:42 -0400 (Thu, 12 Jan 2023)
nebbiolo2Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    ERROR  
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.5.1 Monterey / x86_64  OK    ERROR  

Summary

Package: TCGAWorkflow
Version: 1.22.2
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAWorkflow
StartedAt: 2023-04-11 11:04:26 -0400 (Tue, 11 Apr 2023)
EndedAt: 2023-04-11 11:10:09 -0400 (Tue, 11 Apr 2023)
EllapsedTime: 343.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data TCGAWorkflow
###
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* checking for file ‘TCGAWorkflow/DESCRIPTION’ ... OK
* preparing ‘TCGAWorkflow’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘TCGAWorkflow.Rmd’ using rmarkdown
2023-04-11 11:09:16.575 R[39504:1017075628] XType: com.apple.fonts is not accessible.
2023-04-11 11:09:16.575 R[39504:1017075628] XType: XTFontStaticRegistry is enabled.
Quitting from lines 1694-1695 (TCGAWorkflow.Rmd) 
Error: processing vignette 'TCGAWorkflow.Rmd' failed with diagnostics:
argument "xlim" is missing, with no default
--- failed re-building ‘TCGAWorkflow.Rmd’

SUMMARY: processing the following file failed:
  ‘TCGAWorkflow.Rmd’

Error: Vignette re-building failed.
Execution halted