Back to Build/check report for BioC 3.16 experimental data |
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This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the methylclockData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 228/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
methylclockData 1.6.0 (landing page) Dolors Pelegri-Siso
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | ||||||||
Package: methylclockData |
Version: 1.6.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings methylclockData_1.6.0.tar.gz |
StartedAt: 2023-04-11 11:59:45 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 12:03:58 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 253.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: methylclockData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:methylclockData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings methylclockData_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/methylclockData.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘methylclockData/DESCRIPTION’ ... OK * this is package ‘methylclockData’ version ‘1.6.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘methylclockData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘methylcockData.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/methylclockData.Rcheck/00check.log’ for details.
methylclockData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL methylclockData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘methylclockData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (methylclockData)
methylclockData.Rcheck/methylclockData-Ex.timings
name | user | system | elapsed | |
get_MethylationDataExample | 2.255 | 0.207 | 2.909 | |
get_TestDataset | 1.095 | 0.052 | 1.547 | |
get_coefBLUP | 1.797 | 0.144 | 2.335 | |
get_coefBohlin | 1.062 | 0.047 | 1.485 | |
get_coefEN | 1.914 | 0.180 | 2.469 | |
get_coefEPIC | 1.051 | 0.116 | 1.556 | |
get_coefHannum | 1.273 | 0.108 | 1.699 | |
get_coefHorvath | 1.080 | 0.025 | 1.412 | |
get_coefKnightGA | 1.188 | 0.040 | 1.627 | |
get_coefLeeGA | 1.025 | 0.044 | 1.351 | |
get_coefLevine | 1.201 | 0.068 | 1.649 | |
get_coefMayneGA | 1.245 | 0.092 | 1.712 | |
get_coefPedBE | 1.122 | 0.028 | 1.547 | |
get_coefSkin | 1.273 | 0.056 | 1.703 | |
get_coefTL | 1.074 | 0.032 | 1.483 | |
get_coefWu | 1.306 | 0.055 | 1.776 | |
get_cpgs_bn | 1.218 | 0.032 | 1.626 | |
get_probeAnnotation21kdatMethUsed | 1.137 | 0.041 | 1.555 | |
get_references | 1.321 | 0.039 | 1.764 | |