Back to Build/check report for BioC 3.16 experimental data |
|
This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the SpikeInSubset package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 369/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
SpikeInSubset 1.38.0 (landing page) Rafael A. Irizarry
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
Package: SpikeInSubset |
Version: 1.38.0 |
Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SpikeInSubset.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SpikeInSubset_1.38.0.tar.gz |
StartedAt: 2023-04-11 12:20:20 -0400 (Tue, 11 Apr 2023) |
EndedAt: 2023-04-11 12:21:34 -0400 (Tue, 11 Apr 2023) |
EllapsedTime: 74.4 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: SpikeInSubset.Rcheck |
Warnings: 3 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SpikeInSubset.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SpikeInSubset_1.38.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/SpikeInSubset.Rcheck’ * using R version 4.2.3 (2023-03-15) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * checking for file ‘SpikeInSubset/DESCRIPTION’ ... OK * this is package ‘SpikeInSubset’ version ‘1.38.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘SpikeInSubset’ can be installed ... WARNING Found the following significant warnings: Warning: xhyb.Rd: docType ‘instance’ is unrecognized See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/SpikeInSubset.Rcheck/00install.out’ for details. * checking installed package size ... NOTE installed size is 20.5Mb sub-directories of 1Mb or more: data 20.4Mb * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... NOTE Packages in Depends field not imported from: ‘Biobase’ ‘affy’ These packages need to be imported from (in the NAMESPACE file) for when this namespace is loaded but not attached. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... WARNING prepare_Rd: xhyb.Rd: docType ‘instance’ is unrecognized * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress hgu133a.spikein.xhyb.rda 12Kb 2Kb gzip mas133.rda 2.2Mb 985Kb xz mas95.rda 1.3Mb 573Kb xz rma133.rda 2.2Mb 891Kb xz rma95.rda 1.3Mb 522Kb xz spikein133.rda 7.3Mb 4.3Mb xz spikein95.rda 6.1Mb 3.6Mb xz * checking examples ... NONE * checking PDF version of manual ... OK * DONE Status: 3 WARNINGs, 3 NOTEs See ‘/home/biocbuild/bbs-3.16-data-experiment/meat/SpikeInSubset.Rcheck/00check.log’ for details.
SpikeInSubset.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL SpikeInSubset ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘SpikeInSubset’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help Warning: xhyb.Rd: docType ‘instance’ is unrecognized *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SpikeInSubset)