Wenpin Hou
| Snapshot Date: 2023-04-11 07:30:01 -0400 (Tue, 11 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/SCATEData |
| git_branch: RELEASE_3_16 |
| git_last_commit: 97d090d |
| git_last_commit_date: 2022-11-01 11:23:51 -0400 (Tue, 01 Nov 2022) |
| Back to Build/check report for BioC 3.16 experimental data |
|
This page was generated on 2023-04-11 14:50:27 -0400 (Tue, 11 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the SCATEData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 342/416 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| SCATEData 1.8.0 (landing page) Wenpin Hou
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | |||||||
| Package: SCATEData |
| Version: 1.8.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SCATEData_1.8.0.tar.gz |
| StartedAt: 2023-04-11 12:17:18 -0400 (Tue, 11 Apr 2023) |
| EndedAt: 2023-04-11 12:20:49 -0400 (Tue, 11 Apr 2023) |
| EllapsedTime: 210.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: SCATEData.Rcheck |
| Warnings: 0 |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:SCATEData.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings SCATEData_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.16-data-experiment/meat/SCATEData.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘SCATEData/DESCRIPTION’ ... OK
* this is package ‘SCATEData’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SCATEData’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 336.2Mb
sub-directories of 1Mb or more:
extdata 336.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: hg19.rds.Rd:18-19: Dropping empty section \usage
prepare_Rd: mm10.rds.Rd:18-19: Dropping empty section \usage
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
hg19.rds 4.861 0.427 5.289
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘SCATEData_package.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.16-data-experiment/meat/SCATEData.Rcheck/00check.log’
for details.
SCATEData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL SCATEData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘SCATEData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location snapshotDate(): 2022-10-31 ** testing if installed package can be loaded from final location snapshotDate(): 2022-10-31 ** testing if installed package keeps a record of temporary installation path * DONE (SCATEData)
SCATEData.Rcheck/SCATEData-Ex.timings
| name | user | system | elapsed | |
| GSM1596831.bam | 0.041 | 0.016 | 0.057 | |
| GSM1596840.bam | 0.062 | 0.003 | 0.066 | |
| GSM1596874.bam | 0.04 | 0.00 | 0.04 | |
| GSM1596881.bam | 0.041 | 0.001 | 0.041 | |
| GSM1596940.bam | 0.012 | 0.003 | 0.016 | |
| GSM1596942.bam | 0.038 | 0.000 | 0.038 | |
| GSM1596944.bam | 0.075 | 0.012 | 0.087 | |
| GSM1596961.bam | 0.070 | 0.008 | 0.078 | |
| GSM1597041.bam | 0.065 | 0.000 | 0.066 | |
| GSM1597096.bam | 0.043 | 0.008 | 0.052 | |
| SRR1779746.bam | 0.067 | 0.004 | 0.072 | |
| SRR1779805.bam | 0.087 | 0.004 | 0.091 | |
| SRR1779856.bam | 0.014 | 0.004 | 0.018 | |
| SRR1779874.bam | 0.108 | 0.004 | 0.113 | |
| SRR1779956.bam | 0.064 | 0.004 | 0.068 | |
| SRR1779959.bam | 0.065 | 0.000 | 0.066 | |
| SRR1779973.bam | 0.041 | 0.000 | 0.042 | |
| SRR1780018.bam | 0.02 | 0.00 | 0.02 | |
| SRR1780020.bam | 0.037 | 0.000 | 0.037 | |
| SRR1780054.bam | 0.083 | 0.004 | 0.087 | |
| hg19.rds | 4.861 | 0.427 | 5.289 | |
| mm10.rds | 2.262 | 0.240 | 2.505 | |