Marta R. Hidalgo
| Snapshot Date: 2023-04-12 02:30:01 -0400 (Wed, 12 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/hpAnnot |
| git_branch: RELEASE_3_16 |
| git_last_commit: 640c19e |
| git_last_commit_date: 2021-02-09 11:23:17 -0400 (Tue, 09 Feb 2021) |
| Back to Build/check report for BioC 3.16 annotations |
|
This page was generated on 2023-04-12 06:00:10 -0400 (Wed, 12 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.3 (2023-03-15) -- "Shortstop Beagle" | 4502 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the hpAnnot package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 22/36 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| hpAnnot 1.1.0 (landing page) Marta R. Hidalgo
| nebbiolo2 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | |||||||
| Package: hpAnnot |
| Version: 1.1.0 |
| Command: /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:hpAnnot.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings hpAnnot_1.1.0.tar.gz |
| StartedAt: 2023-04-12 03:05:04 -0400 (Wed, 12 Apr 2023) |
| EndedAt: 2023-04-12 03:05:42 -0400 (Wed, 12 Apr 2023) |
| EllapsedTime: 38.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: hpAnnot.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD check --install=check:hpAnnot.install-out.txt --library=/home/biocbuild/bbs-3.16-bioc/R/site-library --timings hpAnnot_1.1.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.16-data-annotation/meat/hpAnnot.Rcheck’
* using R version 4.2.3 (2023-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘hpAnnot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘hpAnnot’ version ‘1.1.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘hpAnnot’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 242.6Mb
sub-directories of 1Mb or more:
extdata 242.4Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: ‘AnnotationHub’
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘hpAnnot-vignette.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.16-data-annotation/meat/hpAnnot.Rcheck/00check.log’
for details.
hpAnnot.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.16-bioc/R/bin/R CMD INSTALL hpAnnot ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.16-bioc/R/site-library’ * installing *source* package ‘hpAnnot’ ... ** using staged installation ** inst ** help No man pages found in package ‘hpAnnot’ *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (hpAnnot)