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This page was generated on 2023-04-19 11:01:58 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for spatialDE on kjohnson


To the developers/maintainers of the spatialDE package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1926/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
spatialDE 1.4.3  (landing page)
Gabriele Sales
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/spatialDE
git_branch: RELEASE_3_16
git_last_commit: 2a4dac9
git_last_commit_date: 2023-01-23 12:44:09 -0400 (Mon, 23 Jan 2023)
kjohnsonmacOS 13.0 Ventura / arm64  OK    ERROR  skipped

Summary

Package: spatialDE
Version: 1.4.3
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data spatialDE
StartedAt: 2023-04-18 08:34:57 -0400 (Tue, 18 Apr 2023)
EndedAt: 2023-04-18 08:35:45 -0400 (Tue, 18 Apr 2023)
EllapsedTime: 48.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data spatialDE
###
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* checking for file ‘spatialDE/DESCRIPTION’ ... OK
* preparing ‘spatialDE’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘spatialDE.Rmd’ using rmarkdown
Quitting from lines 123-125 (spatialDE.Rmd) 
Error: processing vignette 'spatialDE.Rmd' failed with diagnostics:
ImportError: The `scipy` install you are using seems to be broken, (extension modules cannot be imported), please try reinstalling.

--- failed re-building ‘spatialDE.Rmd’

SUMMARY: processing the following file failed:
  ‘spatialDE.Rmd’

Error: Vignette re-building failed.
Execution halted