Back to Mac ARM64 build report for BioC 3.16 |
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This page was generated on 2023-04-19 11:01:58 -0400 (Wed, 19 Apr 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
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To the developers/maintainers of the seqbias package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1841/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
seqbias 1.46.0 (landing page) Daniel Jones
| kjohnson | macOS 13.0 Ventura / arm64 | ERROR | ERROR | skipped | ||||||||
Package: seqbias |
Version: 1.46.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqbias |
StartedAt: 2023-04-16 14:25:42 -0400 (Sun, 16 Apr 2023) |
EndedAt: 2023-04-16 14:25:47 -0400 (Sun, 16 Apr 2023) |
EllapsedTime: 4.4 seconds |
RetCode: 1 |
Status: ERROR |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL seqbias ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library’ * installing *source* package ‘seqbias’ ... ** using staged installation ** libs $SEQBIAS_OBJ is [common.o miscmath.o pos_table.o kmer_matrix.o logger.o motif.o seqbias.o sequencing_bias.o twobitseq.o] $YAML_CPP_OBJ is [aliasmanager.o conversion.o directives.o emitfromevents.o emitter.o emitterstate.o emitterutils.o exp.o iterator.o nodebuilder.o node.o nodeownership.o null.o ostream.o parser.o regex.o scanner.o scanscalar.o scantag.o scantoken.o simplekey.o singledocparser.o stream.o tag.o] clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/zlibbioc/include' -I/opt/R/arm64/include -Wall -Wextra -I. -fPIC -falign-functions=64 -Wall -g -O2 -c common.c -o common.o clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rhtslib/include' -I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/zlibbioc/include' -I/opt/R/arm64/include -Wall -Wextra -I. -fPIC -falign-functions=64 -Wall -g -O2 -c miscmath.c -o miscmath.o miscmath.c:21:12: error: implicitly declaring library function 'finite' with type 'int (double)' [-Werror,-Wimplicit-function-declaration] return finite(a) && 0.0 <= a && a <= 1.0; ^ miscmath.c:21:12: note: include the header <math.h> or explicitly provide a declaration for 'finite' 1 error generated. make: *** [miscmath.o] Error 1 ERROR: compilation failed for package ‘seqbias’ * removing ‘/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/seqbias’