Back to Mac ARM64 build report for BioC 3.16
A[B]CDEFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-04-19 11:01:53 -0400 (Wed, 19 Apr 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnsonmacOS 13.0 Venturaarm644.2.2 (2022-10-31) -- "Innocent and Trusting" 4256
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for bridge on kjohnson


To the developers/maintainers of the bridge package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 226/2183HostnameOS / ArchINSTALLBUILDBUILD BIN
bridge 1.62.0  (landing page)
Raphael Gottardo
Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023)
git_url: https://git.bioconductor.org/packages/bridge
git_branch: RELEASE_3_16
git_last_commit: 1e5a52f
git_last_commit_date: 2022-11-01 10:39:18 -0400 (Tue, 01 Nov 2022)
kjohnsonmacOS 13.0 Ventura / arm64  ERROR    ERROR  skipped

Summary

Package: bridge
Version: 1.62.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bridge
StartedAt: 2023-04-16 22:33:28 -0400 (Sun, 16 Apr 2023)
EndedAt: 2023-04-16 22:33:29 -0400 (Sun, 16 Apr 2023)
EllapsedTime: 1.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bridge
###
##############################################################################
##############################################################################


* checking for file ‘bridge/DESCRIPTION’ ... OK
* preparing ‘bridge’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘bridge’ ...
** using staged installation
** libs
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/arm64/include   -fPIC  -falign-functions=64 -Wall -g -O2  -c bridge2.affy.c -o bridge2.affy.o
bridge2.affy.c:37:7: warning: unused variable 'count_model' [-Wunused-variable]
  int count_model=0;
      ^
bridge2.affy.c:36:7: warning: unused variable 'old_model' [-Wunused-variable]
  int old_model;
      ^
bridge2.affy.c:302:3: error: implicit declaration of function 'dirichlet' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
  dirichlet(gamma, 2, w);
  ^
bridge2.affy.c:302:3: note: did you mean 'dirichlet2'?
bridge2.affy.c:10:6: note: 'dirichlet2' declared here
void dirichlet2(double *gamma, int n, double *w);
     ^
bridge2.affy.c:282:10: warning: unused variable 'w_new' [-Wunused-variable]
  double w_new[2];
         ^
3 warnings and 1 error generated.
make: *** [bridge2.affy.o] Error 1
ERROR: compilation failed for package ‘bridge’
* removing ‘/private/tmp/RtmpPp82VC/Rinstbfc735725784/bridge’
      -----------------------------------
ERROR: package installation failed