Fangda Song
| Snapshot Date: 2023-04-12 13:00:02 -0400 (Wed, 12 Apr 2023) |
| git_url: https://git.bioconductor.org/packages/BUSseq |
| git_branch: RELEASE_3_16 |
| git_last_commit: f389627 |
| git_last_commit_date: 2023-01-19 11:15:08 -0400 (Thu, 19 Jan 2023) |
| Back to Mac ARM64 build report for BioC 3.16 |
|
This page was generated on 2023-04-19 11:01:53 -0400 (Wed, 19 Apr 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson | macOS 13.0 Ventura | arm64 | 4.2.2 (2022-10-31) -- "Innocent and Trusting" | 4256 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the BUSseq package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 241/2183 | Hostname | OS / Arch | INSTALL | BUILD | BUILD BIN | ||||||||
| BUSseq 1.4.2 (landing page) Fangda Song
| kjohnson | macOS 13.0 Ventura / arm64 | OK | OK | OK | | |||||||
| Package: BUSseq |
| Version: 1.4.2 |
| Command: rm -rf BUSseq.buildbin-libdir && mkdir BUSseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BUSseq_1.4.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BUSseq.buildbin-libdir |
| StartedAt: 2023-04-18 14:09:23 -0400 (Tue, 18 Apr 2023) |
| EndedAt: 2023-04-18 14:10:33 -0400 (Tue, 18 Apr 2023) |
| EllapsedTime: 70.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: BUSseq_1.4.2.tgz |
| PackageFileSize: 1.016 MiB |
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### Running command:
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### rm -rf BUSseq.buildbin-libdir && mkdir BUSseq.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BUSseq_1.4.2.tar.gz /Library/Frameworks/R.framework/Resources/bin/R BUSseq.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BUSseq.buildbin-libdir BUSseq_1.4.2.tar.gz'
>>>>>>>
* installing *source* package ‘BUSseq’ ...
** using staged installation
** libs
/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: warning: overriding commands for target `BUSseq.so'
Makevars:9: warning: ignoring old commands for target `BUSseq.so'
/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: warning: overriding commands for target `BUSseq.so'
Makevars:9: warning: ignoring old commands for target `BUSseq.so'
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c BUSseq.cpp -o BUSseq.o
BUSseq.cpp:2674:7: warning: variable 'All_Drop' set but not used [-Wunused-but-set-variable]
bool All_Drop = true;
^
BUSseq.cpp:3033:6: warning: variable 'count_gene' set but not used [-Wunused-but-set-variable]
int count_gene = 0;
^
2 warnings generated.
clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rngstream.cpp -o rngstream.o
clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o BUSseq.so BUSseq.o rngstream.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1 -L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
ld: warning: -undefined dynamic_lookup may not work with chained fixups
ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame
installing to /Volumes/External/bbs-3.16-bioc-m1/meat/BUSseq.buildbin-libdir/00LOCK-BUSseq/00new/BUSseq/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BUSseq)
>>>>>>>
>>>>>>> FIXING LINKS FOR BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so
>>>>>>>
install_name_tool -change "/opt/R/arm64/lib/libgcc_s.1.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgcc_s.1.1.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/opt/R/arm64/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/opt/R/arm64/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/opt/R/arm64/gfortran/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libgfortran.5.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"
install_name_tool -change "/opt/R/arm64/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/lib/libquadmath.0.dylib" "BUSseq.buildbin-libdir/BUSseq/libs/BUSseq.so"