Back to Long Tests report for BioC 3.15

This page was generated on 2022-10-15 21:00:02 -0400 (Sat, 15 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4383
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CHECK results for biodbLipidmaps on nebbiolo1


To the developers/maintainers of the biodbLipidmaps package:
Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 9/26HostnameOS / ArchCHECK
biodbLipidmaps 1.2.0  (landing page)
Pierrick Roger
Snapshot Date: 2022-10-15 06:55:01 -0400 (Sat, 15 Oct 2022)
git_url: https://git.bioconductor.org/packages/biodbLipidmaps
git_branch: RELEASE_3_15
git_last_commit: 484c60e
git_last_commit_date: 2022-04-26 12:19:54 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK  

Summary

Package: biodbLipidmaps
Version: 1.2.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.2.0.tar.gz
StartedAt: 2022-10-15 08:06:09 -0400 (Sat, 15 Oct 2022)
EndedAt: 2022-10-15 08:09:56 -0400 (Sat, 15 Oct 2022)
EllapsedTime: 227.6 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbLipidmaps.Rcheck
Warnings: 0

Tests output

biodbLipidmaps.Rcheck/tests/testthat.Rout


R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2022-10-15 08:06:37.275][biodb::testContext]
biodb.INFO [2022-10-15 08:06:37.277][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:06:37.277][biodb::testContext] Test context - Generic long tests
biodb.INFO [2022-10-15 08:06:37.278][biodb::testContext] ********************************************************************************
biodb.INFO [2022-10-15 08:06:37.279][biodb::testContext]
biodb.INFO [2022-10-15 08:06:37.292][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:06:37.293][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2022-10-15 08:06:37.299][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:06:37.300][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2022-10-15 08:06:37.300][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2022-10-15 08:06:37.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.303][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2022-10-15 08:06:37.325][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2022-10-15 08:06:37.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.328][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2022-10-15 08:06:37.329][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2022-10-15 08:06:37.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.332][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2022-10-15 08:06:37.332][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2022-10-15 08:06:37.333][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2022-10-15 08:06:37.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.336][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2022-10-15 08:06:37.336][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2022-10-15 08:06:37.337][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2022-10-15 08:06:37.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.340][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2022-10-15 08:06:37.340][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2022-10-15 08:06:37.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.343][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2022-10-15 08:06:37.344][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2022-10-15 08:06:37.344][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2022-10-15 08:06:37.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.347][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2022-10-15 08:06:37.348][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2022-10-15 08:06:37.348][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.350][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2022-10-15 08:06:37.351][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2022-10-15 08:06:37.352][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2022-10-15 08:06:37.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.354][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:06:37.355][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2022-10-15 08:06:37.356][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2022-10-15 08:06:37.357][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2022-10-15 08:06:37.357][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2022-10-15 08:06:37.358][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2022-10-15 08:06:37.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.361][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2022-10-15 08:06:37.361][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2022-10-15 08:06:37.362][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.364][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2022-10-15 08:06:37.365][self$set] Set key entries.sep to "|".
biodb.DEBUG[2022-10-15 08:06:37.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.367][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2022-10-15 08:06:37.368][self$set] Set key offline to FALSE.
biodb.DEBUG[2022-10-15 08:06:37.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.371][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2022-10-15 08:06:37.371][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2022-10-15 08:06:37.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.374][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2022-10-15 08:06:37.375][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2022-10-15 08:06:37.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.377][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2022-10-15 08:06:37.378][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2022-10-15 08:06:37.383][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2022-10-15 08:06:37.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.385][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2022-10-15 08:06:37.386][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2022-10-15 08:06:37.387][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2022-10-15 08:06:37.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.392][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2022-10-15 08:06:37.415][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.425][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2022-10-15 08:06:37.426][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.426][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:06:37.427][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.428][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.429][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.429][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.430][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:06:37.431][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:06:37.432][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.432][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2022-10-15 08:06:37.433][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:06:37.434][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.434][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.435][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:06:37.435][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:06:37.435][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:06:37.435][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:06:37.435][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:06:37.436][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:06:37.437][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.437][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.438][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:06:37.439][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.440][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.441][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.441][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:06:37.442][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:06:37.443][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.443][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.444][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2022-10-15 08:06:37.446][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.446][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:06:37.447][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.448][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:06:37.448][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.449][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.450][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.451][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.451][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:06:37.452][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:06:37.453][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.457][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2022-10-15 08:06:37.458][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:06:37.459][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.459][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.460][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:06:37.460][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:06:37.460][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2022-10-15 08:06:37.460][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2022-10-15 08:06:37.460][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2022-10-15 08:06:37.461][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:06:37.462][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.462][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.463][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:06:37.464][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.464][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.465][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.466][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.466][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:06:37.467][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:06:37.468][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.468][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.469][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2022-10-15 08:06:37.470][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.471][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2022-10-15 08:06:37.472][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.472][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:06:37.473][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.474][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.474][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.475][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.476][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:06:37.477][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:06:37.477][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.478][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2022-10-15 08:06:37.479][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:06:37.479][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.480][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.481][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.481][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:06:37.482][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.483][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.483][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:06:37.484][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.485][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.486][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.486][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.487][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:06:37.488][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:06:37.488][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.489][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.490][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2022-10-15 08:06:37.491][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.492][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2022-10-15 08:06:37.493][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.493][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:06:37.494][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.495][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.496][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.496][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.497][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2022-10-15 08:06:37.498][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:06:37.498][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.499][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2022-10-15 08:06:37.500][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:06:37.501][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.501][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.502][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.503][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:06:37.503][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.504][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.505][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:06:37.506][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.507][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.508][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.508][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:06:37.509][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:06:37.510][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.510][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.513][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:06:37.514][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.570][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2022-10-15 08:06:37.573][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2022-10-15 08:06:37.574][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2022-10-15 08:06:37.575][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2022-10-15 08:06:37.576][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2022-10-15 08:06:37.577][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2022-10-15 08:06:37.578][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2022-10-15 08:06:37.579][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2022-10-15 08:06:37.580][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2022-10-15 08:06:37.581][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2022-10-15 08:06:37.582][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2022-10-15 08:06:37.583][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2022-10-15 08:06:37.584][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2022-10-15 08:06:37.585][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2022-10-15 08:06:37.586][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2022-10-15 08:06:37.587][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:06:37.588][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2022-10-15 08:06:37.589][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2022-10-15 08:06:37.590][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2022-10-15 08:06:37.594][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2022-10-15 08:06:37.595][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2022-10-15 08:06:37.596][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2022-10-15 08:06:37.597][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2022-10-15 08:06:37.598][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2022-10-15 08:06:37.599][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2022-10-15 08:06:37.600][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2022-10-15 08:06:37.601][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2022-10-15 08:06:37.602][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2022-10-15 08:06:37.603][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2022-10-15 08:06:37.604][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2022-10-15 08:06:37.605][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2022-10-15 08:06:37.606][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2022-10-15 08:06:37.607][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2022-10-15 08:06:37.608][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2022-10-15 08:06:37.609][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2022-10-15 08:06:37.609][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2022-10-15 08:06:37.610][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2022-10-15 08:06:37.611][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2022-10-15 08:06:37.612][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2022-10-15 08:06:37.613][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2022-10-15 08:06:37.614][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2022-10-15 08:06:37.615][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2022-10-15 08:06:37.616][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2022-10-15 08:06:37.617][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2022-10-15 08:06:37.618][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2022-10-15 08:06:37.619][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2022-10-15 08:06:37.620][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2022-10-15 08:06:37.621][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2022-10-15 08:06:37.622][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2022-10-15 08:06:37.623][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2022-10-15 08:06:37.624][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2022-10-15 08:06:37.625][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2022-10-15 08:06:37.626][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2022-10-15 08:06:37.627][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2022-10-15 08:06:37.628][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2022-10-15 08:06:37.629][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2022-10-15 08:06:37.630][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2022-10-15 08:06:37.631][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2022-10-15 08:06:37.632][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2022-10-15 08:06:37.633][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2022-10-15 08:06:37.634][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2022-10-15 08:06:37.635][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2022-10-15 08:06:37.636][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2022-10-15 08:06:37.637][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2022-10-15 08:06:37.638][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2022-10-15 08:06:37.639][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2022-10-15 08:06:37.640][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2022-10-15 08:06:37.641][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2022-10-15 08:06:37.641][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2022-10-15 08:06:37.642][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2022-10-15 08:06:37.643][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2022-10-15 08:06:37.644][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2022-10-15 08:06:37.645][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2022-10-15 08:06:37.646][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2022-10-15 08:06:37.647][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2022-10-15 08:06:37.648][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2022-10-15 08:06:37.649][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2022-10-15 08:06:37.650][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2022-10-15 08:06:37.651][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2022-10-15 08:06:37.652][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2022-10-15 08:06:37.653][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2022-10-15 08:06:37.654][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2022-10-15 08:06:37.655][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2022-10-15 08:06:37.659][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2022-10-15 08:06:37.660][initialize] This is biodb version 1.4.2.
biodb.DEBUG[2022-10-15 08:06:37.663][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2022-10-15 08:06:37.663][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.665][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.677][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.680][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2022-10-15 08:06:37.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:06:37.748][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2022-10-15 08:06:37.754][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2022-10-15 08:06:37.756][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.756][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.757][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.758][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2022-10-15 08:06:37.759][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.759][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.760][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.761][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.761][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2022-10-15 08:06:37.762][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2022-10-15 08:06:37.763][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.764][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2022-10-15 08:06:37.764][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2022-10-15 08:06:37.765][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2022-10-15 08:06:37.766][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2022-10-15 08:06:37.767][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2022-10-15 08:06:37.767][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2022-10-15 08:06:37.767][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2022-10-15 08:06:37.768][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.769][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2022-10-15 08:06:37.770][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2022-10-15 08:06:37.771][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2022-10-15 08:06:37.771][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2022-10-15 08:06:37.772][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-10-15 08:06:37.772][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2022-10-15 08:06:37.773][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2022-10-15 08:06:37.773][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2022-10-15 08:06:37.774][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2022-10-15 08:06:37.775][self$setPropertyValue]
biodb.DEBUG[2022-10-15 08:06:37.779][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2022-10-15 08:06:37.780][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2022-10-15 08:06:37.797][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2022-10-15 08:06:37.798][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2022-10-15 08:06:37.801][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2022-10-15 08:06:37.804][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2022-10-15 08:06:37.807][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-10-15 08:06:37.808][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2022-10-15 08:06:37.809][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2022-10-15 08:06:37.810][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2022-10-15 08:06:37.821][biodb::testThat]
biodb.INFO [2022-10-15 08:06:37.822][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2022-10-15 08:06:37.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:37.823][biodb::testThat]
biodb.TRACE[2022-10-15 08:06:37.826][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2022-10-15 08:06:37.829][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:06:37.831][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-10-15 08:06:37.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:37.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:37.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:37.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:37.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:37.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:37.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:37.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:37.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:37.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:37.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.910][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:37.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:37.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:37.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:37.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:37.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:37.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:37.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:37.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:37.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:37.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:37.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.955][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:37.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:37.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.958][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:37.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:37.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:37.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:37.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:37.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:37.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:37.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.981][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:37.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:37.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.984][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:06:37.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:37.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:37.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:37.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:37.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:37.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:37.993][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:37.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:37.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:37.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.051][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.059][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.065][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:38.087][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2022-10-15 08:06:38.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:38.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:38.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.099][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:38.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:38.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.128][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.152][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.155][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.158][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.174][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.175][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.176][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.193][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.195][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.212][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.214][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.234][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.243][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.252][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.253][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.271][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.272][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.273][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.281][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.283][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.286][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.287][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.288][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.292][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.297][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.299][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.303][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.303][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.322][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000002-content.tsv".
biodb.DEBUG[2022-10-15 08:06:38.349][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:06:38.350][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-10-15 08:06:38.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:38.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:38.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:38.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:38.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:38.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:38.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.377][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.402][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:38.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.425][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:06:38.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:38.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.444][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.450][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:38.472][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000002.
biodb.TRACE[2022-10-15 08:06:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.493][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:38.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:38.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.532][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.560][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.560][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.561][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.570][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.578][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.581][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.597][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.598][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.599][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.607][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.615][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.616][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.625][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.635][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.636][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.656][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.676][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.684][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.685][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.686][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.691][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.695][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.696][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.701][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.701][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.702][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.706][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.708][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.708][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.712][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.713][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.717][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.720][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.723][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA08040013-content.tsv".
biodb.DEBUG[2022-10-15 08:06:38.726][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:06:38.727][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-10-15 08:06:38.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:38.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:38.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:38.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:38.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:38.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:38.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:38.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:38.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.764][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:38.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:38.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:38.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.787][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:38.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.789][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:38.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:38.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.797][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.812][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:06:38.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.818][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.821][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:38.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.834][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.842][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.845][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:38.875][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA08040013.
biodb.TRACE[2022-10-15 08:06:38.879][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:38.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:38.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:38.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:38.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:38.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.896][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.923][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.925][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:38.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.941][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.943][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:38.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.959][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.961][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.961][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.981][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.982][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.983][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:38.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.994][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:38.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:38.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:38.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:38.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.000][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.000][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.001][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.002][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.020][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.020][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.021][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.037][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.037][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.047][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.055][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.056][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.057][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.058][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.078][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.078][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.090][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.096][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.097][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.105][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.107][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.112][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.116][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.117][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.118][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.122][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.124][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.127][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.128][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.129][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.129][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.133][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.140][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.140][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.144][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.145][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.149][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.151][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.151][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:06:39.155][biodb::testThat]
biodb.INFO [2022-10-15 08:06:39.156][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2022-10-15 08:06:39.157][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:39.158][biodb::testThat]
biodb.DEBUG[2022-10-15 08:06:39.159][private$loadEntries] Creating entries from ids [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.DEBUG[2022-10-15 08:06:39.165][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 3 id(s)...
biodb.TRACE[2022-10-15 08:06:39.167][cch$loadFileContent] Trying to load 3 files from cache: [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.TRACE[2022-10-15 08:06:39.169][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2022-10-15 08:06:39.170][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv, /home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv, /home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv".
biodb.DEBUG[2022-10-15 08:06:39.171][conn$getEntryContent] 3 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:06:39.189][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 3 content(s).
biodb.DEBUG[2022-10-15 08:06:39.190][self$createEntryFromContent] Parsing 3 LIPID MAPS Structure entries.
biodb.DEBUG[2022-10-15 08:06:39.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:39.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:39.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:39.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:39.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:39.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:39.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:39.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.264][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:06:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.273][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:39.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.305][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:39.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:39.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:39.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:39.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:39.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:39.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:39.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:39.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.344][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.347][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.375][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.391][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:39.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.394][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:06:39.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.410][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:39.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:06:39.430][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:06:39.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:06:39.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:06:39.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:06:39.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:06:39.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:06:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:06:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.455][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:06:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:06:39.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:06:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:06:39.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.485][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.488][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:06:39.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:06:39.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:06:39.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:06:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:06:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.552][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:06:39.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:06:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:06:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:39.592][self$createEntryFromContent] Accession numbers: LMFA00000001, LMFA00000002, LMFA08040013.
biodb.TRACE[2022-10-15 08:06:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:06:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:06:39.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:06:39.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:06:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:06:39.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:06:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:06:39.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:06:39.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.610][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:06:39.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:06:39.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:06:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:06:39.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2022-10-15 08:06:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2022-10-15 08:06:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:06:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2022-10-15 08:06:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:06:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2022-10-15 08:06:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:06:39.630][biodb::testThat]
biodb.INFO [2022-10-15 08:06:39.631][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2022-10-15 08:06:39.632][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:39.633][biodb::testThat]
biodb.TRACE[2022-10-15 08:06:39.634][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.636][ef$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:39.637][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2022-10-15 08:06:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:39.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:39.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:39.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:39.665][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-10-15 08:06:39.762][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-10-15 08:06:39.780][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:06:39.781][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:06:39.782][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride".
biodb.TRACE[2022-10-15 08:06:41.131][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride).
biodb.DEBUG[2022-10-15 08:06:41.726][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:06:41.732][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content"
biodb.TRACE[2022-10-15 08:06:41.756][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.request"
biodb.DEBUG[2022-10-15 08:06:41.764][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2022-10-15 08:06:41.778][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:41.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:41.780][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:41.781][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:06:41.784][biodb::testThat]
biodb.INFO [2022-10-15 08:06:41.785][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2022-10-15 08:06:41.785][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:41.787][biodb::testThat]
biodb.TRACE[2022-10-15 08:06:41.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:41.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:41.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:41.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:41.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:41.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:41.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:41.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:41.967][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-10-15 08:06:41.969][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:41.984][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-10-15 08:06:41.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:41.987][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2022-10-15 08:06:42.001][biodb::testThat]
biodb.INFO [2022-10-15 08:06:42.002][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2022-10-15 08:06:42.003][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:42.004][biodb::testThat]
biodb.TRACE[2022-10-15 08:06:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:42.030][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:42.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:42.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2022-10-15 08:06:42.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2022-10-15 08:06:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:42.078][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:42.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2022-10-15 08:06:42.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:42.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:06:42.084][biodb::testThat]
biodb.INFO [2022-10-15 08:06:42.084][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2022-10-15 08:06:42.085][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:42.086][biodb::testThat]
biodb.INFO [2022-10-15 08:06:42.090][biodb::testThat]
biodb.INFO [2022-10-15 08:06:42.091][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2022-10-15 08:06:42.092][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:42.093][biodb::testThat]
biodb.INFO [2022-10-15 08:06:42.096][biodb::testThat]
biodb.INFO [2022-10-15 08:06:42.097][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2022-10-15 08:06:42.098][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:42.098][biodb::testThat]
biodb.DEBUG[2022-10-15 08:06:42.105][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2022-10-15 08:06:43.137][getUrlContent] Use RCurl for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2022-10-15 08:06:43.553][biodb::testThat]
biodb.INFO [2022-10-15 08:06:43.554][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2022-10-15 08:06:43.554][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:43.555][biodb::testThat]
biodb.TRACE[2022-10-15 08:06:43.562][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:43.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:43.563][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.564][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.565][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.565][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.566][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.567][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:06:43.568][biodb::testThat]
biodb.INFO [2022-10-15 08:06:43.569][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2022-10-15 08:06:43.569][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:06:43.570][biodb::testThat]
biodb.TRACE[2022-10-15 08:06:43.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:43.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:43.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:43.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:43.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:06:43.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:06:43.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:43.733][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-10-15 08:06:43.735][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:43.736][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-10-15 08:06:43.737][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:43.738][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2022-10-15 08:06:43.839][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2022-10-15 08:06:43.841][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:06:43.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2022-10-15 08:06:43.843][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:06:43.844][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2022-10-15 08:06:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:06:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:06:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:06:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:06:43.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:06:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:06:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:06:43.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-10-15 08:06:43.937][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:06:43.938][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:06:43.948][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-10-15 08:06:48.925][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-10-15 08:06:58.859][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:06:58.865][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content"
biodb.TRACE[2022-10-15 08:06:58.881][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.request"
biodb.DEBUG[2022-10-15 08:06:59.178][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2022-10-15 08:06:59.180][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:06:59.181][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:06:59.183][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2022-10-15 08:06:59.811][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2022-10-15 08:07:00.465][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:07:00.470][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content"
biodb.TRACE[2022-10-15 08:07:00.480][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.request"
biodb.DEBUG[2022-10-15 08:07:00.535][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2022-10-15 08:07:00.538][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:07:00.539][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:07:00.540][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.TRACE[2022-10-15 08:07:01.164][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06).
biodb.DEBUG[2022-10-15 08:07:01.782][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:07:01.788][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content"
biodb.TRACE[2022-10-15 08:07:01.817][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.request"
biodb.TRACE[2022-10-15 08:07:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:07:01.842][biodb::testThat]
biodb.INFO [2022-10-15 08:07:01.843][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2022-10-15 08:07:01.844][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:07:01.844][biodb::testThat]
biodb.TRACE[2022-10-15 08:07:01.847][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:07:01.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:07:01.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.850][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:07:01.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:07:01.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.852][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:07:01.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:07:01.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:01.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:01.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:01.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:01.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:01.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:01.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:01.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:01.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:01.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:07:01.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:01.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:01.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:01.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:01.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:01.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:01.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:07:02.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:07:02.023][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:07:02.024][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-10-15 08:07:02.025][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:07:02.071][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-10-15 08:07:02.583][private$loadEntries] Creating entries from ids [1]: "LMFA00000003".
biodb.DEBUG[2022-10-15 08:07:02.639][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2022-10-15 08:07:02.641][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000003".
biodb.TRACE[2022-10-15 08:07:02.642][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2022-10-15 08:07:02.643][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2022-10-15 08:07:02.644][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2022-10-15 08:07:02.645][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2022-10-15 08:07:02.645][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2022-10-15 08:07:02.646][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2022-10-15 08:07:02.649][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:02.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:02.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:02.655][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:02.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:02.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:02.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:07:02.658][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.DEBUG[2022-10-15 08:07:02.660][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:07:02.661][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:07:02.662][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.TRACE[2022-10-15 08:07:03.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv).
biodb.DEBUG[2022-10-15 08:07:03.920][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:07:03.926][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.content"
biodb.TRACE[2022-10-15 08:07:03.934][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.request"
biodb.TRACE[2022-10-15 08:07:03.941][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv"
biodb.DEBUG[2022-10-15 08:07:03.944][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2022-10-15 08:07:03.955][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2022-10-15 08:07:03.956][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2022-10-15 08:07:03.957][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:03.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:03.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:03.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:03.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:03.963][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:03.964][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:03.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:07:03.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:07:03.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.978][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:07:03.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2022-10-15 08:07:03.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.981][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:07:03.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2022-10-15 08:07:03.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:07:03.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:07:03.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:07:03.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:07:03.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:07:03.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:07:03.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:03.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:07:03.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:07:03.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:03.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:07:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.004][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2022-10-15 08:07:04.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:04.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.009][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:07:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:07:04.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.012][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:07:04.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:07:04.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:07:04.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:07:04.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:07:04.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:07:04.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.025][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:07:04.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:07:04.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.028][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2022-10-15 08:07:04.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:07:04.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:07:04.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:07:04.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:07:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:07:04.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.037][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2022-10-15 08:07:04.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:07:04.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.042][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.045][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:04.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.051][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:04.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:04.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:04.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:04.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:04.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:04.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:04.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:04.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:04.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:04.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:07:04.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:07:04.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:07:04.084][self$createEntryFromContent] Accession numbers: LMFA00000003.
biodb.DEBUG[2022-10-15 08:07:04.091][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:07:04.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:04.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:04.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:04.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:04.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:04.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:04.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.106][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.107][private$selectFields]
biodb.TRACE[2022-10-15 08:07:04.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:04.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:04.109][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.109][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.110][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.111][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.111][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.112][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.113][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.114][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.114][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.115][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.116][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.116][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.117][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.118][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.119][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.119][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:04.120][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.123][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.126][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.135][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:07:04.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:04.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:04.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:04.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:04.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:04.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:04.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:04.144][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.147][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.150][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.151][private$selectFields]
biodb.TRACE[2022-10-15 08:07:04.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:04.152][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:04.153][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.154][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.155][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.155][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.156][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.157][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.158][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.159][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.160][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.161][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.161][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.162][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.163][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.163][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.164][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:04.165][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.168][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.171][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.174][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:07:04.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:04.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:04.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:04.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:04.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:04.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:04.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:04.183][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.189][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.190][private$selectFields]
biodb.TRACE[2022-10-15 08:07:04.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:04.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:04.192][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.193][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.194][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.194][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.195][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.196][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.197][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.197][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.198][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.199][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.200][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:04.200][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.201][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.202][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.202][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.203][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.207][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.210][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:04.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:04.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:07:04.214][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:07:04.215][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:07:04.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:04.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:04.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:04.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:04.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:04.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:04.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:07:04.314][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:07:04.317][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:07:04.318][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:07:04.319][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.TRACE[2022-10-15 08:07:08.943][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01).
biodb.DEBUG[2022-10-15 08:07:18.790][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:07:18.796][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content"
biodb.TRACE[2022-10-15 08:07:18.812][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.request"
biodb.DEBUG[2022-10-15 08:07:19.182][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:07:19.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:19.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:19.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:19.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:19.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:19.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:19.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:19.212][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.215][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.230][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.231][private$selectFields]
biodb.TRACE[2022-10-15 08:07:19.231][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:19.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:19.233][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.233][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.234][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.236][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.237][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.239][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.245][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.246][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.247][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.247][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.248][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.249][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:19.249][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.252][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.255][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:07:19.258][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:19.259][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:19.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:19.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:19.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:19.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:19.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:19.266][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.269][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.271][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.272][private$selectFields]
biodb.TRACE[2022-10-15 08:07:19.273][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:19.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:19.274][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.275][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.276][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.278][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.278][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.280][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.281][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.282][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.282][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.283][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.284][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.284][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:19.285][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.288][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:07:19.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:19.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:19.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:19.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:19.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:19.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:19.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:19.302][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.305][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.308][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.308][private$selectFields]
biodb.TRACE[2022-10-15 08:07:19.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:19.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:19.310][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.311][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.312][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.314][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.314][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.316][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.317][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:19.318][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.318][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.319][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.320][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.320][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:19.321][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.324][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.327][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:19.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:19.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:19.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:07:19.330][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:07:19.331][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:07:19.332][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:19.333][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:19.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:19.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:19.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:19.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:19.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:07:19.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:07:19.425][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:07:19.426][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:07:19.427][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.TRACE[2022-10-15 08:07:24.094][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01).
biodb.DEBUG[2022-10-15 08:07:34.316][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:07:34.322][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content"
biodb.TRACE[2022-10-15 08:07:34.338][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.request"
biodb.DEBUG[2022-10-15 08:07:34.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:07:34.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:34.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:34.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:34.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:34.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:34.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:34.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.557][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.558][private$selectFields]
biodb.TRACE[2022-10-15 08:07:34.558][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:34.559][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:34.560][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.560][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.561][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.562][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.562][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.563][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.564][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.564][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.565][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.566][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.567][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.567][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.568][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.569][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.570][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.570][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:34.571][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.574][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.577][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.580][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:07:34.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:34.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:34.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:34.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:34.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:34.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:34.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:34.589][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.591][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.594][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.595][private$selectFields]
biodb.TRACE[2022-10-15 08:07:34.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:34.596][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:34.597][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.598][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.599][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.599][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.600][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.601][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.601][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.602][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.603][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.603][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.604][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.605][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.605][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.607][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:34.608][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.611][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.614][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:07:34.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:34.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:34.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:34.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:34.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:34.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:34.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:34.625][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.628][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.631][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.632][private$selectFields]
biodb.TRACE[2022-10-15 08:07:34.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:34.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:34.634][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.634][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.635][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.636][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.637][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.638][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.639][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.640][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.641][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:34.641][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.642][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.643][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.643][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.644][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:34.645][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.648][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.651][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:07:34.654][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:07:34.655][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:07:34.661][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:34.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:34.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.664][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:34.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.666][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:34.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:07:34.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:07:34.670][biodb::testThat]
biodb.INFO [2022-10-15 08:07:34.671][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2022-10-15 08:07:34.672][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:07:34.672][biodb::testThat]
biodb.TRACE[2022-10-15 08:07:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:07:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:07:34.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.677][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:07:34.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:07:34.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.680][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:07:34.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:07:34.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:34.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:34.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:34.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:34.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:34.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:07:34.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:34.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:07:34.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:34.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:07:34.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:34.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:34.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:34.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:34.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:34.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:34.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:07:34.869][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2022-10-15 08:07:34.872][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:07:34.873][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5652f5994fce967a05a065a71bac3ed6".
biodb.TRACE[2022-10-15 08:07:34.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:07:34.913][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content".
biodb.DEBUG[2022-10-15 08:07:35.342][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:07:35.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:35.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:35.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:35.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:35.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:35.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:35.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:35.354][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.358][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.361][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.362][private$selectFields]
biodb.TRACE[2022-10-15 08:07:35.362][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:35.363][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:35.364][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.365][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.366][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.368][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.369][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.369][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.370][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.387][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.388][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.389][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.389][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.392][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.396][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:07:35.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:35.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:35.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:35.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:35.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:35.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:35.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:35.411][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.418][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.418][private$selectFields]
biodb.TRACE[2022-10-15 08:07:35.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:35.420][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:35.421][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.421][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.422][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.423][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.424][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.424][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.425][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.426][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.427][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.427][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.428][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.429][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.430][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.431][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.431][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.432][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.436][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.439][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:07:35.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:35.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:35.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:35.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:35.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:35.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:35.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.458][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.459][private$selectFields]
biodb.TRACE[2022-10-15 08:07:35.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:35.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:35.461][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.462][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.463][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.463][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.464][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.465][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.466][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.467][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.468][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.469][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:35.469][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.470][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.472][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.473][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:35.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:07:35.484][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:07:35.484][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:07:35.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:35.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:35.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:35.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:35.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:35.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:35.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:07:35.585][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.DEBUG[2022-10-15 08:07:35.587][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:07:35.588][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:07:35.589][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.TRACE[2022-10-15 08:07:40.385][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911).
biodb.DEBUG[2022-10-15 08:07:50.444][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:07:50.450][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.content"
biodb.TRACE[2022-10-15 08:07:50.467][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.request"
biodb.DEBUG[2022-10-15 08:07:50.686][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:07:50.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:50.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:50.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:50.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:50.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:50.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:50.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:50.695][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.698][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.701][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.702][private$selectFields]
biodb.TRACE[2022-10-15 08:07:50.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:50.703][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:50.704][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.705][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.705][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.707][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.708][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.708][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.709][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.710][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.710][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.711][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.712][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.713][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.715][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.718][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.724][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:07:50.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:50.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:50.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:50.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:50.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:50.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:50.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:50.733][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.736][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.739][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.739][private$selectFields]
biodb.TRACE[2022-10-15 08:07:50.740][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:50.741][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:50.741][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.742][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.743][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.744][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.745][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.746][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.747][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.748][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.748][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.749][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.750][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.752][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:50.753][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.756][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.758][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.761][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:07:50.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:50.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:50.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:50.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:50.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:50.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:50.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:07:50.770][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.776][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.777][private$selectFields]
biodb.TRACE[2022-10-15 08:07:50.777][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:07:50.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:07:50.779][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.779][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.780][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.781][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.782][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.783][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.784][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.784][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.785][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.786][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:07:50.787][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.787][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.788][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.789][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.789][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:07:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.796][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:07:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:07:50.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:07:50.799][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:07:50.800][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:07:50.801][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:07:50.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:07:50.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:07:50.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:07:50.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:07:50.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:07:50.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:07:50.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:07:50.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.DEBUG[2022-10-15 08:07:50.908][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:07:50.909][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:07:50.910][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.TRACE[2022-10-15 08:07:55.746][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435).
biodb.DEBUG[2022-10-15 08:08:05.725][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:05.732][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.content"
biodb.TRACE[2022-10-15 08:08:05.748][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.request"
biodb.DEBUG[2022-10-15 08:08:05.977][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:05.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:05.979][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:05.980][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:05.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:05.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:05.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:05.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:05.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:05.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:05.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:05.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:05.990][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:05.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:05.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:05.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:05.992][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:05.993][private$selectFields]
biodb.TRACE[2022-10-15 08:08:05.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:05.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:05.995][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:05.996][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:05.997][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:05.998][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:05.998][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:05.999][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.000][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.001][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.002][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.003][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.003][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.004][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.005][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.005][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.006][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:06.007][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.010][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.013][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:06.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:06.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:06.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:06.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:06.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:06.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:06.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:06.025][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.028][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.031][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.031][private$selectFields]
biodb.TRACE[2022-10-15 08:08:06.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:06.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:06.034][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.034][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.035][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.036][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.037][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.038][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.039][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.040][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.041][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.041][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.042][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.044][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:06.045][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.054][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:06.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:06.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:06.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:06.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:06.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:06.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:06.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:06.063][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.069][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.070][private$selectFields]
biodb.TRACE[2022-10-15 08:08:06.071][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:06.071][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:06.072][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.073][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.074][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.075][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.076][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.077][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.079][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.079][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.080][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.081][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.082][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.082][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.083][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:06.084][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.087][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.093][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:06.093][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:06.094][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:06.100][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:06.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:06.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.103][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:06.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:06.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:06.110][biodb::testThat]
biodb.INFO [2022-10-15 08:08:06.110][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2022-10-15 08:08:06.111][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:06.112][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:06.114][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:06.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:06.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:06.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:06.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.120][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:06.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:06.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:06.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:06.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:06.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:06.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.134][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.155][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:06.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:06.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:06.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:06.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:06.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:06.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:06.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:06.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:06.270][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:08:06.273][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:06.274][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-10-15 08:08:06.275][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:06.312][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-10-15 08:08:06.710][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:06.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:06.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:06.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:06.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:06.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:06.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:06.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.722][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.725][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.726][private$selectFields]
biodb.TRACE[2022-10-15 08:08:06.726][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:06.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:06.728][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.729][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.729][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.730][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.731][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.731][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.732][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.733][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.733][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.734][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.735][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.736][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.736][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.737][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.738][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:06.739][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.742][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.745][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:06.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:06.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:06.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:06.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:06.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:06.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:06.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.759][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.762][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.763][private$selectFields]
biodb.TRACE[2022-10-15 08:08:06.764][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:06.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:06.765][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.766][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.766][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.767][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.769][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.771][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.771][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.772][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.773][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.773][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.774][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.775][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.775][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.782][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.785][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:06.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:06.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:06.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:06.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:06.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:06.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:06.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:06.805][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.808][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.811][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.811][private$selectFields]
biodb.TRACE[2022-10-15 08:08:06.812][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:06.813][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:06.813][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.814][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.815][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.816][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.817][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.818][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.819][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.820][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.820][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:06.821][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.822][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.824][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:06.824][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.827][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.830][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:06.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:06.834][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:06.834][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:06.836][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:06.837][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:06.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:06.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:06.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:06.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:06.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:06.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:08:06.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:06.926][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-10-15 08:08:06.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:06.967][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-10-15 08:08:07.384][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:07.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:07.386][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:07.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:07.391][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.392][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:07.394][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.396][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.399][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.400][private$selectFields]
biodb.TRACE[2022-10-15 08:08:07.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:07.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:07.402][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.402][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.403][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.404][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.405][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.405][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.406][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.407][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.407][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.408][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.409][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.409][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.410][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.411][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.411][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.412][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.418][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.421][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:07.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:07.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:07.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:07.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:07.429][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.432][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.435][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.435][private$selectFields]
biodb.TRACE[2022-10-15 08:08:07.436][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:07.437][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:07.437][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.438][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.439][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.439][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.441][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.441][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.443][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.443][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.444][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.445][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.445][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.447][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.447][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:07.448][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.451][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.454][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:07.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:07.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:07.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:07.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.463][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:07.465][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.468][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.470][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.471][private$selectFields]
biodb.TRACE[2022-10-15 08:08:07.472][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:07.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:07.473][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.474][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.475][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.476][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.477][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.478][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.479][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.480][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.480][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:07.481][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.482][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.482][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.483][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.484][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:07.485][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:07.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:07.493][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:07.494][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:07.495][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:07.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:07.497][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:07.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:07.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:07.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:07.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:07.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:07.595][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:08:07.597][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:07.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-10-15 08:08:07.599][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:07.632][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-10-15 08:08:08.035][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:08.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:08.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.047][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.050][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.051][private$selectFields]
biodb.TRACE[2022-10-15 08:08:08.051][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:08.052][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:08.053][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.053][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.054][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.055][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.056][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.057][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.058][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.059][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.060][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.060][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.061][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.062][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.063][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:08.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.067][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.073][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:08.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:08.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:08.081][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.087][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.087][private$selectFields]
biodb.TRACE[2022-10-15 08:08:08.088][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:08.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:08.089][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.090][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.091][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.092][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.093][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.094][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.094][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.095][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.096][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.096][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.097][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.098][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.100][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:08.101][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.103][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.109][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:08.110][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:08.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:08.118][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.121][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.124][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.124][private$selectFields]
biodb.TRACE[2022-10-15 08:08:08.125][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:08.126][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:08.126][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.127][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.128][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.128][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.129][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.130][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.131][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.132][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.133][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.133][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:08.134][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.135][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.136][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.136][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.137][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:08.138][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.141][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.143][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:08.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.147][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:08.147][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:08.148][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:08:08.162][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:08.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:08.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.165][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:08.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:08:08.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.175][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:08:08.176][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:08:08.177][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.178][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.180][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.180][ef$get] fields variable is a list.
biodb.INFO [2022-10-15 08:08:08.182][biodb::testThat]
biodb.INFO [2022-10-15 08:08:08.182][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2022-10-15 08:08:08.183][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:08:08.184][biodb::testThat]
biodb.TRACE[2022-10-15 08:08:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:08.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:08.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.192][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:08:08.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:08:08.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:08.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:08.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:08.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:08.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:08:08.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.212][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:08.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:08:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:08:08.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:08.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:08.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:08.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:08.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:08.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:08.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:08.340][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:08:08.342][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:08.343][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:08.344][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.TRACE[2022-10-15 08:08:13.136][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11).
biodb.DEBUG[2022-10-15 08:08:23.265][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:23.271][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content"
biodb.TRACE[2022-10-15 08:08:23.287][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.request"
biodb.DEBUG[2022-10-15 08:08:23.485][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:23.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:23.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:23.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:23.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:23.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:23.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:23.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:23.495][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.498][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.501][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.501][private$selectFields]
biodb.TRACE[2022-10-15 08:08:23.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:23.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:23.503][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.504][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.505][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.506][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.507][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.508][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.509][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.510][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.510][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.511][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.512][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.513][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.513][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.514][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:23.515][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.518][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:23.524][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:23.525][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:23.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:23.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:23.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:23.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:23.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:23.532][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.535][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.537][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.538][private$selectFields]
biodb.TRACE[2022-10-15 08:08:23.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:23.539][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:23.540][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.541][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.542][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.542][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.543][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.544][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.544][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.545][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.546][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.547][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.547][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.548][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.549][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.549][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.550][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.551][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:23.552][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.554][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.557][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.560][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:23.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:23.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:23.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:23.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:23.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:23.567][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:23.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:23.569][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.572][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.575][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.576][private$selectFields]
biodb.TRACE[2022-10-15 08:08:23.576][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:23.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:23.578][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.578][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.579][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.580][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.580][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.581][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.582][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.583][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.584][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.585][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:23.585][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.586][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.587][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.588][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.588][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:23.589][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.595][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:23.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:23.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:23.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:23.599][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:23.600][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:23.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:23.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:23.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:23.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:23.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:23.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:23.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:23.706][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:08:23.708][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:23.709][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:23.710][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.TRACE[2022-10-15 08:08:28.655][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11).
biodb.DEBUG[2022-10-15 08:08:38.414][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:38.420][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content"
biodb.TRACE[2022-10-15 08:08:38.435][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.request"
biodb.DEBUG[2022-10-15 08:08:38.653][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:38.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:38.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:38.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:38.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:38.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:38.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:38.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:38.663][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.666][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.668][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.669][private$selectFields]
biodb.TRACE[2022-10-15 08:08:38.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:38.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:38.671][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.672][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.673][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.673][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.674][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.675][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.676][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.676][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.678][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.678][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.679][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.680][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.680][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.681][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.682][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:38.683][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:38.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:38.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:38.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:38.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:38.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:38.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:38.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:38.700][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.703][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.705][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.706][private$selectFields]
biodb.TRACE[2022-10-15 08:08:38.707][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:38.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:38.708][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.709][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.710][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.712][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.712][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.715][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.715][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.716][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.717][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.717][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.718][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.719][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.722][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.728][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:38.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:38.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:38.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:38.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:38.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:38.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:38.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:38.737][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.743][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.743][private$selectFields]
biodb.TRACE[2022-10-15 08:08:38.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:38.745][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:38.745][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.746][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.747][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.747][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.748][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.749][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.750][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.750][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.751][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.752][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.753][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:38.753][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.754][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.755][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.756][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:38.757][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:38.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:38.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:38.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:38.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:38.767][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:38.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:38.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:38.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:38.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:38.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:38.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:38.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:38.865][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:08:38.868][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:38.869][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:38.870][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.TRACE[2022-10-15 08:08:43.846][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11).
biodb.DEBUG[2022-10-15 08:08:54.333][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:08:54.340][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content"
biodb.TRACE[2022-10-15 08:08:54.356][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.request"
biodb.DEBUG[2022-10-15 08:08:54.553][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:54.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:54.563][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.570][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.571][private$selectFields]
biodb.TRACE[2022-10-15 08:08:54.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:54.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:54.573][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.574][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.574][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.575][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.576][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.577][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.577][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.578][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.579][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.580][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.580][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.581][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.582][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.582][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.583][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.584][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:54.585][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.591][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.594][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:54.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:54.603][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.607][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.610][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.610][private$selectFields]
biodb.TRACE[2022-10-15 08:08:54.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:54.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:54.613][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.613][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.614][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.617][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.617][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.620][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.620][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.621][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.622][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.624][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.624][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:54.625][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.628][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.631][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.635][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:54.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.650][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.651][private$selectFields]
biodb.TRACE[2022-10-15 08:08:54.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:54.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:54.653][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.654][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.655][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.656][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.657][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.658][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.660][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.661][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:54.662][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.663][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.665][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:54.666][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.669][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.672][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:54.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:54.676][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:54.676][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:54.677][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:54.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:54.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:54.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:54.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:54.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:54.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:54.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:54.800][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:08:54.802][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:54.803][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-10-15 08:08:54.804][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:54.835][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-10-15 08:08:55.250][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:55.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.260][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.266][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.267][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.268][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.268][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.269][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.270][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.270][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.273][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.273][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.276][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.276][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.277][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.278][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.280][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:55.281][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.287][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.290][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:55.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.299][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.302][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.305][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.305][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.306][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.307][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.307][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.308][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.309][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.311][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.312][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.314][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.315][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.315][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.316][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.317][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.317][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.318][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.322][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.328][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:55.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.337][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.342][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.343][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.344][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.344][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.345][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.346][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.347][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.347][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.348][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.349][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.349][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.350][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.351][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.352][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.352][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.353][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.354][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.354][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.355][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.356][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.363][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.366][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:55.367][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:55.367][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:55.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:55.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:08:55.468][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:55.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-10-15 08:08:55.470][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:55.505][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-10-15 08:08:55.898][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:55.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.911][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.914][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.914][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.915][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.916][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.916][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.917][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.918][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.919][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.919][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.920][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.921][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.922][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.922][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.923][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.924][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.924][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.925][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.926][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.927][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.927][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:55.928][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.934][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.937][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:55.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.946][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.949][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.952][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.953][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.954][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.955][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.956][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.957][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.957][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.959][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.960][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.961][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.962][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.962][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.963][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.964][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.965][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.965][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.966][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:55.967][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.970][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:55.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:55.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:55.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:55.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:55.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:55.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:55.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.991][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.991][private$selectFields]
biodb.TRACE[2022-10-15 08:08:55.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:55.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:55.994][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:55.994][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.995][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:55.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:55.997][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.998][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:55.999][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.000][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.001][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.002][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.003][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.004][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.005][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:56.005][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.008][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.011][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:56.015][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:56.016][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:56.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.018][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:56.117][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:08:56.119][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:08:56.120][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-10-15 08:08:56.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:08:56.153][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-10-15 08:08:56.545][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:08:56.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.554][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.560][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.561][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.563][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.564][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.565][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.565][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.566][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.567][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.568][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.568][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.569][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.570][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.570][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.571][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.572][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.573][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.573][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.574][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:56.575][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.578][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.581][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:08:56.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.598][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.599][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.601][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.602][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.602][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.604][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.604][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.605][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.607][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.608][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.609][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.610][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.611][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.612][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:56.612][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.615][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.621][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:08:56.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:08:56.630][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.633][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.636][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.637][private$selectFields]
biodb.TRACE[2022-10-15 08:08:56.637][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:08:56.638][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:08:56.639][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.639][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.640][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.641][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.642][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.642][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.643][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.644][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.645][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.646][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:08:56.647][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.647][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.648][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.649][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:08:56.650][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.656][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:08:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:08:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:08:56.659][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:08:56.660][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:08:56.661][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:08:56.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:08:56.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:08:56.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:08:56.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:08:56.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:08:56.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:08:56.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:08:56.771][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:08:56.774][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:08:56.774][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:08:56.776][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.TRACE[2022-10-15 08:09:01.651][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11).
biodb.DEBUG[2022-10-15 08:09:11.382][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:09:11.388][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content"
biodb.TRACE[2022-10-15 08:09:11.403][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.request"
biodb.DEBUG[2022-10-15 08:09:11.594][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:11.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:11.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:11.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:11.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:11.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:11.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:11.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:11.604][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.607][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.610][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.610][private$selectFields]
biodb.TRACE[2022-10-15 08:09:11.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:11.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:11.612][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.613][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.614][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.616][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.617][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.619][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.620][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.621][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.621][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.623][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:11.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.627][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:11.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:11.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:11.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:11.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:11.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:11.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:11.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.648][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.649][private$selectFields]
biodb.TRACE[2022-10-15 08:09:11.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:11.650][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:11.651][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.652][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.652][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.654][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.654][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.655][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.656][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.657][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.658][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.659][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.660][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.662][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.666][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:11.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:11.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:11.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:11.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:11.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:11.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:11.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:11.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.684][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.687][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.687][private$selectFields]
biodb.TRACE[2022-10-15 08:09:11.688][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:11.689][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:11.689][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.690][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.691][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.692][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.693][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.694][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.695][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.696][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.697][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:11.698][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.698][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.700][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.701][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.708][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:11.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:11.711][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:11.711][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:11.712][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:11.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:11.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:11.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:11.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:11.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:11.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:11.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:11.837][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:11.839][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:09:11.840][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:09:11.842][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.TRACE[2022-10-15 08:09:17.153][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11).
biodb.DEBUG[2022-10-15 08:09:27.377][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:09:27.383][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content"
biodb.TRACE[2022-10-15 08:09:27.398][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.request"
biodb.DEBUG[2022-10-15 08:09:27.600][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:27.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:27.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:27.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:27.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:27.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:27.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:27.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.612][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.615][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.616][private$selectFields]
biodb.TRACE[2022-10-15 08:09:27.616][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:27.617][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:27.618][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.618][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.619][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.621][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.621][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.622][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.623][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.624][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.625][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.625][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.626][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.627][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.627][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.628][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.632][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:27.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:27.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:27.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:27.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:27.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:27.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:27.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:27.646][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.652][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.652][private$selectFields]
biodb.TRACE[2022-10-15 08:09:27.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:27.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:27.654][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.655][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.656][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.657][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.658][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.659][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.659][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.661][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.662][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.662][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.663][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.664][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.665][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:27.666][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.669][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.672][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.675][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:27.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:27.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:27.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:27.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:27.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:27.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:27.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:27.683][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.686][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.689][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.690][private$selectFields]
biodb.TRACE[2022-10-15 08:09:27.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:27.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:27.692][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.692][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.693][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.694][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.694][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.695][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.696][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.697][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.697][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.698][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.699][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:27.700][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.700][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.701][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.702][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.702][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:27.703][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.706][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.709][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:27.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:27.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:27.712][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:27.713][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:27.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:27.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:27.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:27.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:27.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:27.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:27.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:27.811][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:27.814][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2022-10-15 08:09:27.815][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2022-10-15 08:09:27.816][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.TRACE[2022-10-15 08:09:33.042][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11).
biodb.DEBUG[2022-10-15 08:09:42.764][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2022-10-15 08:09:42.770][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content"
biodb.TRACE[2022-10-15 08:09:42.785][private$doSaveContentToFile] Saving to cache [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.request"
biodb.DEBUG[2022-10-15 08:09:42.983][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:42.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:42.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:42.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:42.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:42.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:42.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:42.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:42.995][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:42.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:42.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:42.998][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:42.999][private$selectFields]
biodb.TRACE[2022-10-15 08:09:42.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:43.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:43.001][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.001][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.002][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.004][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.004][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.005][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.006][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.007][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.008][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.008][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.009][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.010][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.011][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:43.012][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.017][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.020][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:43.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:43.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:43.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:43.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:43.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:43.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:43.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:43.029][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.031][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.034][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.035][private$selectFields]
biodb.TRACE[2022-10-15 08:09:43.035][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:43.036][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:43.037][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.037][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.038][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.039][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.040][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.040][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.041][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.042][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.042][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.043][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.044][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.044][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.045][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.046][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.047][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.051][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.053][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:43.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:43.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:43.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:43.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:43.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:43.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:43.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:43.065][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.071][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.071][private$selectFields]
biodb.TRACE[2022-10-15 08:09:43.072][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:43.073][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:43.074][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.074][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.075][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.077][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.078][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.080][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.081][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.081][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.082][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.083][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.084][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.088][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.091][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.094][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:43.094][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:43.095][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:43.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:43.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:43.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:43.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:43.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:43.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:43.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:43.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:43.352][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:43.353][cch$loadFileContent] Trying to load 1 files from cache: [1]: "856708e2bbeea806179c75604ab7003a".
biodb.TRACE[2022-10-15 08:09:43.354][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:43.388][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content".
biodb.DEBUG[2022-10-15 08:09:43.781][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:43.783][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:43.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:43.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:43.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:43.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:43.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:43.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.796][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.797][private$selectFields]
biodb.TRACE[2022-10-15 08:09:43.798][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:43.798][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:43.799][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.800][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.800][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.801][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.802][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.802][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.803][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.804][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.805][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.805][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.806][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.807][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.807][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.808][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.809][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.819][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:43.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:43.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:43.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:43.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:43.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:43.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:43.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.830][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.832][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.833][private$selectFields]
biodb.TRACE[2022-10-15 08:09:43.834][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:43.834][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:43.835][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.836][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.836][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.837][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.838][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.839][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.839][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.840][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.841][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.841][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.842][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.843][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.844][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.845][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:43.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.849][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:43.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:43.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:43.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:43.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:43.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:43.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:43.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:43.863][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.866][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.869][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.870][private$selectFields]
biodb.TRACE[2022-10-15 08:09:43.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:43.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:43.872][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.872][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.873][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.875][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.876][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.877][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.878][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.879][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:43.879][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.880][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.882][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.882][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:43.883][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.889][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:43.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:43.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:43.892][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:43.892][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:43.893][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:43.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:43.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:43.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:43.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:43.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:43.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:43.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:43.995][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:43.997][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:43.998][cch$loadFileContent] Trying to load 1 files from cache: [1]: "213dc74fea82b4e00a3de9c6296d60ac".
biodb.TRACE[2022-10-15 08:09:43.999][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:44.034][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content".
biodb.DEBUG[2022-10-15 08:09:44.422][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:44.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:44.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:44.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:44.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:44.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:44.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:44.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:44.431][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.437][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.437][private$selectFields]
biodb.TRACE[2022-10-15 08:09:44.438][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:44.439][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:44.439][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.440][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.441][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.443][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.444][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.445][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.446][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.446][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.447][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.448][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.449][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.450][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:44.450][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.453][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.456][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.459][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:44.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:44.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:44.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:44.464][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:44.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:44.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:44.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:44.467][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.473][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.473][private$selectFields]
biodb.TRACE[2022-10-15 08:09:44.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:44.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:44.475][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.476][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.477][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.478][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.479][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.480][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.482][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.482][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.483][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.484][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.484][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.485][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.486][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.492][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:44.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:44.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:44.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:44.500][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:44.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:44.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:44.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.506][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.509][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.510][private$selectFields]
biodb.TRACE[2022-10-15 08:09:44.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:44.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:44.512][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.512][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.513][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.514][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.514][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.515][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.516][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.517][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.517][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.518][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.519][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:44.519][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.520][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.521][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.521][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.522][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:44.523][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.528][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:44.531][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:44.532][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:44.533][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:44.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:44.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:44.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:44.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:44.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:44.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:44.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:44.627][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:44.629][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:44.630][cch$loadFileContent] Trying to load 1 files from cache: [1]: "599a9d63e9d10326d614f066b3a2769e".
biodb.TRACE[2022-10-15 08:09:44.631][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:44.662][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content".
biodb.DEBUG[2022-10-15 08:09:45.047][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:45.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.062][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.062][private$selectFields]
biodb.TRACE[2022-10-15 08:09:45.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:45.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:45.064][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.065][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.066][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.068][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.069][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.071][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.071][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.072][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.073][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.074][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.075][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:45.076][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:45.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.095][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.098][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.099][private$selectFields]
biodb.TRACE[2022-10-15 08:09:45.099][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:45.100][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:45.101][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.101][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.102][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.103][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.104][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.105][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.105][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.106][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.107][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.107][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.108][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.109][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.111][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:45.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.120][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:45.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:45.128][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.131][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.134][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.135][private$selectFields]
biodb.TRACE[2022-10-15 08:09:45.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:45.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:45.137][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.137][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.138][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.139][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.140][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.141][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.142][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.143][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.144][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.144][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.145][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.146][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.146][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.147][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:45.148][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.150][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.153][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:45.157][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:45.158][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:45.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:45.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:45.269][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:45.270][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-10-15 08:09:45.271][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:45.302][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-10-15 08:09:45.692][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:45.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:45.701][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.704][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.707][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.708][private$selectFields]
biodb.TRACE[2022-10-15 08:09:45.708][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:45.709][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:45.710][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.710][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.711][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.712][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.713][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.713][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.714][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.715][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.716][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.717][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.717][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.718][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.719][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.720][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.727][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.729][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:45.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:45.738][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.741][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.744][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.744][private$selectFields]
biodb.TRACE[2022-10-15 08:09:45.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:45.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:45.746][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.747][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.748][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.748][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.749][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.750][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.750][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.751][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.752][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.752][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.753][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.754][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.754][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.756][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.757][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:45.757][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.760][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.763][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:45.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.771][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.777][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.780][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.780][private$selectFields]
biodb.TRACE[2022-10-15 08:09:45.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:45.782][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:45.782][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.783][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.784][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.785][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.785][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.786][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.787][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.787][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.788][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.789][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.789][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:45.790][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.791][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.792][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.792][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.793][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:45.794][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.806][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.809][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:45.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:45.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:45.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:45.813][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:45.814][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:45.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:45.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:45.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:45.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:45.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:45.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:45.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:45.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:45.898][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:45.899][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-10-15 08:09:45.900][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:45.931][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-10-15 08:09:46.339][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:46.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:46.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:46.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:46.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:46.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:46.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:46.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:46.348][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.354][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.355][private$selectFields]
biodb.TRACE[2022-10-15 08:09:46.356][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:46.356][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:46.357][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.358][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.358][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.359][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.360][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.361][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.361][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.362][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.363][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.363][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.364][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.365][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.366][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.366][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.367][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.368][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:46.368][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.377][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:46.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:46.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:46.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:46.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:46.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:46.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:46.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:46.385][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.391][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.391][private$selectFields]
biodb.TRACE[2022-10-15 08:09:46.392][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:46.393][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:46.393][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.394][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.395][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.396][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.397][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.398][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.398][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.399][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.400][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.400][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.401][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.402][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.404][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:46.404][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.410][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.413][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:46.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:46.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:46.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:46.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:46.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:46.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:46.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:46.421][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.424][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.427][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.428][private$selectFields]
biodb.TRACE[2022-10-15 08:09:46.429][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:46.429][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:46.430][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.439][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.440][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.442][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.442][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.443][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.444][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.444][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.445][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.446][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.447][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.447][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.449][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.449][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.455][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:46.459][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:46.460][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:46.461][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:46.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:46.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:46.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:46.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:46.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:46.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:46.542][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:46.544][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:46.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-10-15 08:09:46.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:46.575][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-10-15 08:09:46.959][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:46.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:46.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:46.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:46.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:46.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:46.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:46.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.975][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.975][private$selectFields]
biodb.TRACE[2022-10-15 08:09:46.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:46.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:46.977][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.978][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.979][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.980][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.980][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.981][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.982][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.982][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.983][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.984][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.985][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:46.985][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.986][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.988][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.992][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.994][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:46.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:46.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:46.997][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:46.998][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:46.999][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:46.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:47.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:47.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:47.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:47.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.011][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.012][private$selectFields]
biodb.TRACE[2022-10-15 08:09:47.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:47.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:47.014][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.014][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.015][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.016][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.017][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.017][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.018][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.019][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.019][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.020][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.021][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.021][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.022][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.023][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.024][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.024][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:47.025][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.031][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:47.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:47.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:47.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:47.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:47.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:47.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:47.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:47.051][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.054][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.057][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.057][private$selectFields]
biodb.TRACE[2022-10-15 08:09:47.058][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:47.059][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:47.059][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.060][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.061][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.063][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.063][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.065][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.066][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.067][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.067][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.068][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.069][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.069][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:47.070][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.073][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.076][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.079][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:47.079][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:47.080][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:47.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:47.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:47.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:47.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:47.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:47.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:47.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:47.178][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:47.180][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:47.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ec7b47285bd6f593d724b6f7745f0646".
biodb.TRACE[2022-10-15 08:09:47.182][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:47.212][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content".
biodb.DEBUG[2022-10-15 08:09:47.595][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:47.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:47.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:47.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:47.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:47.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:47.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:47.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.607][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.610][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.611][private$selectFields]
biodb.TRACE[2022-10-15 08:09:47.611][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:47.612][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:47.613][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.613][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.614][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.616][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.617][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.618][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.619][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.620][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.620][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.621][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.623][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.627][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.630][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:47.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:47.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:47.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:47.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:47.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:47.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:47.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:47.641][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.655][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.656][private$selectFields]
biodb.TRACE[2022-10-15 08:09:47.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:47.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:47.658][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.659][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.659][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.661][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.662][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.664][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.665][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.666][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.666][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.667][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.668][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.668][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.672][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.677][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:47.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:47.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:47.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:47.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:47.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:47.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:47.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:47.686][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.688][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.691][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.692][private$selectFields]
biodb.TRACE[2022-10-15 08:09:47.692][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:47.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:47.694][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.694][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.695][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.696][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.696][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.697][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.698][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.699][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.699][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.700][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.701][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:47.701][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.702][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.703][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.704][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.707][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:47.713][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:47.714][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:47.715][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:47.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:47.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:47.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:47.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:47.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:47.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:47.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:47.797][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:47.799][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:47.800][cch$loadFileContent] Trying to load 1 files from cache: [1]: "236b5f2d20f6da60d3d5e29141c3c6fd".
biodb.TRACE[2022-10-15 08:09:47.801][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:47.831][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content".
biodb.DEBUG[2022-10-15 08:09:48.212][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:48.213][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:48.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:48.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:48.218][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:48.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:48.220][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:48.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:48.221][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.224][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.227][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.228][private$selectFields]
biodb.TRACE[2022-10-15 08:09:48.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:48.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:48.230][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.230][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.231][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.232][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.233][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.234][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.235][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.236][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.237][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.238][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.238][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.239][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.240][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.240][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:48.241][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.247][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:48.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:48.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:48.260][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:48.264][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:48.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:48.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:48.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.270][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.272][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.273][private$selectFields]
biodb.TRACE[2022-10-15 08:09:48.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:48.274][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:48.275][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.276][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.276][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.277][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.278][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.279][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.280][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.281][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.282][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.282][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.283][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.285][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:48.286][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.292][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.294][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:48.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:48.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:48.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:48.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:48.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:48.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:48.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:48.303][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.308][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.309][private$selectFields]
biodb.TRACE[2022-10-15 08:09:48.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:48.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:48.311][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.311][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.312][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.313][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.314][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.315][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.316][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.317][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.318][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.318][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.319][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.320][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.321][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.327][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:48.331][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:48.332][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:48.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:48.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:48.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:48.338][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:48.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:48.339][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:48.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:48.415][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2022-10-15 08:09:48.418][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:48.419][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c0ec3345a6e512e30aa3c52ef1c02f40".
biodb.TRACE[2022-10-15 08:09:48.420][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:48.450][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content".
biodb.DEBUG[2022-10-15 08:09:48.837][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:48.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:48.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:48.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:48.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:48.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:48.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:48.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.850][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.853][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.853][private$selectFields]
biodb.TRACE[2022-10-15 08:09:48.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:48.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:48.856][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.856][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.857][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.859][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.868][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.870][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.871][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.871][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.872][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.873][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.874][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.874][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.875][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:48.876][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.878][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.881][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2022-10-15 08:09:48.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:48.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:48.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:48.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:48.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:48.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:48.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.895][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.898][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.899][private$selectFields]
biodb.TRACE[2022-10-15 08:09:48.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:48.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:48.901][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.902][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.902][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.904][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.905][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.906][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.907][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.908][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.909][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.909][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.910][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.911][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.911][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:48.912][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.915][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.917][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.921][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2022-10-15 08:09:48.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:48.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:48.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:48.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:48.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:48.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:48.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:48.929][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.931][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.934][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.935][private$selectFields]
biodb.TRACE[2022-10-15 08:09:48.936][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:48.936][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:48.937][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.938][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.938][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.939][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.940][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.940][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.941][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.942][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.942][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.943][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.944][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2022-10-15 08:09:48.944][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.945][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.947][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2022-10-15 08:09:48.948][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.951][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.953][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:48.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2022-10-15 08:09:48.957][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:48.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:09:48.970][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:48.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:48.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:48.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.976][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:09:48.979][biodb::testThat]
biodb.INFO [2022-10-15 08:09:48.980][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2022-10-15 08:09:48.981][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2022-10-15 08:09:48.981][biodb::testThat]
biodb.TRACE[2022-10-15 08:09:48.983][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:09:48.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:09:48.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.986][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:09:48.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:09:48.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.989][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2022-10-15 08:09:48.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2022-10-15 08:09:48.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:48.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:48.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:48.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2022-10-15 08:09:48.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.026][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2022-10-15 08:09:49.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:49.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:49.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:49.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:49.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:49.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:49.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:49.127][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:49.129][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:49.130][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-10-15 08:09:49.131][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:49.161][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-10-15 08:09:49.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:49.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:49.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:49.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:49.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:49.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:49.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:49.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.568][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.576][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.595][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.596][private$selectFields]
biodb.TRACE[2022-10-15 08:09:49.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:49.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:49.598][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.599][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.600][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.600][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.601][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.602][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.602][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.603][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.604][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.604][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.605][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.606][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.607][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.607][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.609][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.609][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.610][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.611][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.611][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.612][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.613][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.614][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.615][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.615][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.616][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.617][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.617][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.620][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.620][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.621][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.622][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.622][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.623][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.625][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.626][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.627][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.627][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.628][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.629][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.629][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.630][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.631][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.632][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.633][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.634][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.638][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.640][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.642][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.643][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.644][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.644][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.646][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.646][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.649][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.649][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.650][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.651][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.651][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.652][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.653][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.653][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.654][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.655][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.656][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.656][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.658][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.658][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.659][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.660][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.661][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.662][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.665][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.665][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.667][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:49.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.702][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.705][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.748][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2022-10-15 08:09:49.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:49.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:49.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:49.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:49.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:49.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:49.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.762][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.773][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.779][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.782][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.798][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.801][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.802][private$selectFields]
biodb.TRACE[2022-10-15 08:09:49.802][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:49.803][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:49.804][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.804][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.806][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.806][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.809][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.809][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.810][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.811][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.812][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.813][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.814][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.815][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.815][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.816][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.817][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.817][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.818][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.820][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.821][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.822][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.823][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.825][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.826][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.826][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.828][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.829][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.830][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.831][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.831][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.832][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.833][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.833][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.834][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.835][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.835][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.836][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.837][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.837][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.838][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.839][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.840][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.842][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.842][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.843][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.844][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.846][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.846][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.848][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.848][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.849][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:49.850][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.851][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.851][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.852][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.854][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.855][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.855][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.856][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.857][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.858][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.858][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.860][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.861][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.862][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.862][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.863][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.865][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.866][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.867][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.868][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.869][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.870][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.871][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.872][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.915][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.921][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2022-10-15 08:09:49.952][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:49.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:49.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:49.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:49.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:49.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:49.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:49.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:49.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:49.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:49.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:49.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:49.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.983][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.985][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.991][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:49.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:49.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:49.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:49.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.005][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.006][private$selectFields]
biodb.TRACE[2022-10-15 08:09:50.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:50.007][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:50.008][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.009][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.009][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.011][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.013][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.013][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.014][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.015][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.015][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.016][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.017][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.018][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.019][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.020][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.020][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.021][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.022][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.022][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.023][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.024][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.025][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.025][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.026][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.027][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.027][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.028][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.029][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.030][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.030][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.031][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.032][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.032][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.033][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.035][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.036][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.036][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.037][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.038][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.038][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.039][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.040][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.040][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.041][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.042][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.043][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.043][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.044][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.045][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.046][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.047][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.047][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.049][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.050][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.051][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.052][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.053][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.053][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.054][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.055][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.056][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.057][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.057][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.059][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.059][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.060][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.061][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.062][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.063][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.064][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.065][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.065][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.068][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.068][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.070][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.070][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.071][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.072][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.073][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:50.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.104][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.107][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.126][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-10-15 08:09:50.143][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:50.144][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:50.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:50.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:50.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:50.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:50.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:50.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:50.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:50.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:50.228][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:50.229][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-10-15 08:09:50.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:50.260][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-10-15 08:09:50.646][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:50.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:50.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:50.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:50.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:50.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:50.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:50.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:50.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.678][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.689][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.710][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.711][private$selectFields]
biodb.TRACE[2022-10-15 08:09:50.712][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:50.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:50.713][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.714][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.715][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.717][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.719][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.719][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.720][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.722][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.723][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.724][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.725][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.726][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.727][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.729][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.730][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.731][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.732][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.733][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.735][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.736][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.736][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.738][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.738][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.741][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.741][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.742][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.743][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.743][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.744][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.745][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.746][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.747][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.748][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.748][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.749][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.750][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.752][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.753][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.753][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.754][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.755][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.755][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.756][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.758][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.758][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.759][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.760][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.760][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.761][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.762][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.763][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.763][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.764][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.765][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.765][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.766][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.767][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.768][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.768][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.769][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.770][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.770][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.771][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.772][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.773][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.773][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.774][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.776][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.777][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.777][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.779][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.780][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.782][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.782][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.783][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:50.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.804][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.821][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2022-10-15 08:09:50.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:50.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:50.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:50.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:50.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:50.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:50.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.883][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.886][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.888][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.908][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.909][private$selectFields]
biodb.TRACE[2022-10-15 08:09:50.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:50.910][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:50.911][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.911][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.913][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.922][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.923][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.924][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.925][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.925][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.926][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.927][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.928][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.928][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.929][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.930][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.930][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.931][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.932][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.932][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.933][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.934][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.935][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.936][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.936][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.937][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.938][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.939][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.939][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.941][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.941][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.942][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.943][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.944][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.945][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.946][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.946][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.947][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.948][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.948][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.950][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.950][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.952][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.953][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.953][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.954][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.955][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.955][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.956][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.958][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.958][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.959][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.960][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.961][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.963][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.964][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.965][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.965][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:50.966][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.967][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.967][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.968][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.970][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.971][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.972][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.972][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:50.973][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.974][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.974][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:50.975][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:50.976][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.976][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.977][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.978][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:50.979][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.979][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.980][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.981][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:50.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.982][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.983][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:50.983][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:50.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.985][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.985][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.986][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:50.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.987][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.988][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:50.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:50.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.003][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.059][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2022-10-15 08:09:51.060][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:51.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:51.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:51.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:51.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:51.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:51.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.087][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.093][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.112][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.113][private$selectFields]
biodb.TRACE[2022-10-15 08:09:51.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:51.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:51.115][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.116][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.117][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.118][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.120][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.121][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.121][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.122][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.123][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.123][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.132][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.134][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.135][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.135][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.136][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.137][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.137][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.139][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.140][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.141][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.141][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.142][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.143][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.143][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.144][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.145][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.145][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.146][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.148][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.148][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.149][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.150][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.150][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.151][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.152][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.152][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.153][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.154][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.154][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.156][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.156][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.157][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.158][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.158][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.159][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.160][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.160][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.161][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.162][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.162][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.163][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.164][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.164][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.167][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.167][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.168][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.169][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.169][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.171][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.172][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.173][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.174][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.174][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.175][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.176][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.177][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.178][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.179][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.179][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.180][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.182][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.183][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.184][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.185][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.186][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.187][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.188][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.189][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.190][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.190][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.191][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:51.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.220][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.226][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-10-15 08:09:51.260][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:51.261][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:51.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:51.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:51.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:51.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:51.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:51.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:51.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:51.365][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:51.367][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:51.368][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-10-15 08:09:51.369][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:51.401][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-10-15 08:09:51.786][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:51.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:51.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:51.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:51.793][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:51.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:51.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:51.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:51.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.818][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.840][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.841][private$selectFields]
biodb.TRACE[2022-10-15 08:09:51.841][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:51.842][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:51.843][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.843][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.845][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.845][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.847][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.848][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.849][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.849][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.850][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.851][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.851][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.852][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.853][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.854][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.855][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.856][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.856][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.857][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.858][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.859][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.860][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.861][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.862][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.864][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.864][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.865][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.866][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.867][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.870][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.870][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.871][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.873][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.874][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.875][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.875][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.876][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.877][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.877][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.878][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.879][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.880][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.881][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.881][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.883][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.883][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.884][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.885][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.885][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.886][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.887][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.887][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:51.888][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.889][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.892][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.893][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.894][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.894][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.895][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.896][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.896][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.898][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.898][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.899][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.900][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.900][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.901][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.902][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.903][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.904][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.904][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.905][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.906][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.907][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.909][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.909][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.910][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:51.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:51.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:51.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.945][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.950][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:51.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:51.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:51.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:51.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:51.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2022-10-15 08:09:51.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:51.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:51.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:51.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:51.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:51.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:51.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.044][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.045][private$selectFields]
biodb.TRACE[2022-10-15 08:09:52.045][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:52.046][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:52.047][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.047][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.049][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.050][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.052][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.052][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.053][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.054][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.055][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.055][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.056][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.057][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.057][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.058][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.059][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.060][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.060][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.061][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.062][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.063][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.064][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.064][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.066][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.067][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.069][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.069][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.070][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.071][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.072][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.072][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.074][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.075][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.076][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.077][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.077][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.078][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.079][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.079][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.080][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.081][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.081][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.082][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.083][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.084][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.085][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.085][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.086][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.087][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.088][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.089][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.090][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.090][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.091][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.092][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.092][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.093][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.094][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.096][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.097][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.098][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.099][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.100][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.100][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.102][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.103][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.103][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.104][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.105][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.105][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.106][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.107][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.108][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.108][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.110][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.110][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.111][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.113][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.113][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.115][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.116][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.117][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.144][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.153][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.200][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2022-10-15 08:09:52.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:52.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:52.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:52.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:52.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:52.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:52.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:52.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.252][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.253][private$selectFields]
biodb.TRACE[2022-10-15 08:09:52.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:52.254][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:52.255][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.256][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.256][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.258][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.261][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.262][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.264][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.264][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.266][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.267][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.268][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.272][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.273][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.274][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.275][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.275][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.277][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.281][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.282][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.283][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.283][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.285][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.286][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.287][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.287][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.288][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.289][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.289][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.290][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.291][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.291][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.292][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.293][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.293][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.295][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.295][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.297][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.298][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.299][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.300][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:52.300][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.303][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.304][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.304][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.306][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.306][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.307][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.308][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.308][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.309][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.310][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.311][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.312][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.314][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.316][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.319][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.319][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:52.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.345][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.348][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.351][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.368][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-10-15 08:09:52.382][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:52.383][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:52.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:52.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:52.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:52.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:52.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:52.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:52.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:52.480][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:52.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:52.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2022-10-15 08:09:52.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:52.513][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2022-10-15 08:09:52.905][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:52.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:52.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:52.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:52.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:52.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:52.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:52.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.942][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.945][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.948][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:52.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.972][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:52.973][private$selectFields]
biodb.TRACE[2022-10-15 08:09:52.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:52.975][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:52.975][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:52.976][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:52.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:52.978][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.978][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:52.981][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.982][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.982][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.983][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:52.984][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.985][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.986][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:52.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:52.987][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.988][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.989][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.989][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:52.990][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.991][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.992][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:52.993][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.994][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.995][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:52.996][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:52.996][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:52.997][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:52.998][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:52.999][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.000][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.000][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.001][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.002][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.003][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.003][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.004][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.006][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.007][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.056][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.058][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.059][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.060][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.061][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.061][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.062][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.063][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.064][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.065][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.066][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.066][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.067][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.068][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.069][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.071][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.071][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.072][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.073][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.075][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.076][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.076][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.077][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.078][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.079][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.079][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.080][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:53.081][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:53.082][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.082][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.083][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.084][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.086][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.087][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.087][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.088][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.090][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.090][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.091][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.092][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.093][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.093][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.094][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.095][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.095][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.098][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.098][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.099][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.101][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.101][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.102][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.103][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.103][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.104][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.105][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.141][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.144][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2022-10-15 08:09:53.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:53.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:53.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:53.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:53.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:53.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:53.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.216][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.240][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.243][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:53.243][private$selectFields]
biodb.TRACE[2022-10-15 08:09:53.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:53.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:53.246][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:53.246][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.248][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.249][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.251][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.251][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.252][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.253][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.254][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.254][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.255][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.256][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.257][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.257][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.258][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.259][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.260][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.261][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.262][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.262][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.263][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.264][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.265][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.266][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.269][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.270][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.271][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.271][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.272][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.273][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.274][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.274][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.275][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.278][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.278][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.279][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.280][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.280][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.288][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.289][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.290][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.290][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.291][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.292][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.292][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.293][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.294][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.295][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.296][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.297][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.297][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.299][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.300][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.300][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.302][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.302][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.303][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.304][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.305][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.305][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.306][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:53.307][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:53.308][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.308][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.309][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.310][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.312][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.313][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.313][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.314][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.315][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.316][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.316][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.318][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.318][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.319][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.320][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.321][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.321][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.323][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.324][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.325][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.326][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.327][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.329][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.330][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.331][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.364][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.367][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.370][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.385][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2022-10-15 08:09:53.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:53.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:53.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:53.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:53.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:53.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:53.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:53.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.435][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.437][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.460][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.463][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.466][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:53.467][private$selectFields]
biodb.TRACE[2022-10-15 08:09:53.468][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:53.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:53.469][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:53.470][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.471][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.471][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.472][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.474][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.475][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.475][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.476][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.477][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.478][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.478][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.480][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.480][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.481][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.482][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.483][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.484][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.485][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.486][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.487][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.489][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.490][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.492][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.492][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.493][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.494][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.495][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.495][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.497][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.499][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:53.500][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.500][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.501][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.502][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.503][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.504][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.505][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.506][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.507][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.508][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.515][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.515][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.518][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.519][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.520][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.521][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.523][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.524][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.525][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.525][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:53.526][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.527][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.527][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:53.528][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:53.529][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.530][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.531][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.532][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.532][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.533][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.534][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.534][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.535][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.536][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.536][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.537][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.538][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.539][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.539][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.540][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.541][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.541][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.542][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.543][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.544][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.545][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.547][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.548][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.548][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:53.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:53.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:53.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:53.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.575][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.578][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.581][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:53.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:53.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:53.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:53.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-10-15 08:09:53.613][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:53.614][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:53.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:53.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:53.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:53.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:53.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:53.622][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:53.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:53.700][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:53.703][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:53.704][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2022-10-15 08:09:53.705][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:53.736][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2022-10-15 08:09:54.147][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:54.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:54.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:54.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:54.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:54.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:54.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:54.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:54.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.180][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.183][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.202][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.205][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.208][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:54.209][private$selectFields]
biodb.TRACE[2022-10-15 08:09:54.209][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:54.210][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:54.211][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:54.211][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.213][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.213][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.214][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.215][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.216][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.216][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.217][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.218][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.218][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.219][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.220][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.221][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.222][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.222][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.223][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.224][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.225][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.227][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.227][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.228][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.229][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.230][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.232][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.233][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.234][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.234][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.235][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.236][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.236][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.237][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.238][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.238][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.239][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.240][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.241][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.241][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.242][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.243][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.244][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.244][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.245][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.246][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.247][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.248][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.248][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.249][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.250][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.251][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.252][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.253][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.253][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.254][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.255][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.255][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.258][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.258][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.259][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.260][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.260][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.261][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.262][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:54.263][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:54.263][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.265][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.265][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.266][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.267][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.268][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.269][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.270][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.270][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.271][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.272][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.273][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.274][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.275][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.275][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.276][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.277][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.279][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.279][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.280][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.282][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.282][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.284][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.285][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.286][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.324][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2022-10-15 08:09:54.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:54.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:54.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:54.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:54.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:54.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:54.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:54.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.401][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.404][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.407][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.424][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.430][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:54.431][private$selectFields]
biodb.TRACE[2022-10-15 08:09:54.431][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:54.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:54.433][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:54.433][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.435][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.436][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.436][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.437][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.438][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.438][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.439][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.440][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.441][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.441][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.442][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.443][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.443][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.444][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.445][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.445][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.446][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.447][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.449][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.450][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.450][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.452][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.453][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.453][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.455][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.455][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.456][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.457][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.458][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.458][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.459][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.461][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.461][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.464][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.464][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.465][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.466][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.466][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.467][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.468][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.469][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.470][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.471][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.471][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.472][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.473][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.473][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.474][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.475][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.476][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.476][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.477][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.478][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.479][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.479][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.480][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.481][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.481][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.482][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.483][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.483][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.484][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.485][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:54.486][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:54.486][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.487][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.488][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.488][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.491][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.491][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.492][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.493][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.493][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.494][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.495][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.496][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.496][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.497][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.498][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.498][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.499][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.500][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.502][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.503][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.503][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.505][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.505][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.506][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.507][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.508][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.508][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.509][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:54.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.541][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.544][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.547][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.550][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.564][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.592][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2022-10-15 08:09:54.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:54.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:54.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:54.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:54.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:54.599][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:54.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.606][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.624][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.653][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:54.653][private$selectFields]
biodb.TRACE[2022-10-15 08:09:54.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:54.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:54.656][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:54.656][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.657][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.658][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.658][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.661][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.662][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.663][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.664][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.665][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.667][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.668][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.668][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.669][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.670][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.671][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.672][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.673][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.673][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.675][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.676][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.678][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.678][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.679][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.680][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.681][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.681][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.682][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.684][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.684][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:54.686][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.687][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.688][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.689][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.689][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.690][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.691][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.692][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.693][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.693][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.694][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.695][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.695][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.696][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.697][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.698][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.698][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.699][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.700][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.700][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.701][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.702][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.703][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.704][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.705][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.705][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:54.706][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.707][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.707][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:54.708][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:54.709][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.710][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.711][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.711][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.712][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.713][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.714][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.714][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.716][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.716][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.717][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.718][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.718][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.719][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.720][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.721][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.721][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.722][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.723][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.723][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.724][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.725][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.727][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.727][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.728][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:54.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.752][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:54.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:54.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:54.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.763][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:54.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:54.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:54.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:54.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:54.800][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-10-15 08:09:54.801][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:54.801][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2022-10-15 08:09:54.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:54.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:54.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:54.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:54.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:54.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:54.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2022-10-15 08:09:54.885][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2022-10-15 08:09:54.887][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2022-10-15 08:09:54.888][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2022-10-15 08:09:54.889][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2022-10-15 08:09:54.919][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2022-10-15 08:09:55.307][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2022-10-15 08:09:55.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:55.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:55.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:55.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:55.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:55.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:55.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:55.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.365][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.368][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:55.369][private$selectFields]
biodb.TRACE[2022-10-15 08:09:55.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:55.370][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:55.371][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:55.371][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.373][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.374][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.376][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.376][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.377][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.378][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.379][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.379][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.380][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.381][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.382][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.382][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.383][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.384][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.384][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.385][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.387][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.388][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.389][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.390][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.390][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.391][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.393][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.394][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.395][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.395][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.396][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.397][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.397][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.399][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.400][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.400][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.401][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.402][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.403][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.414][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.415][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.416][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.416][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.417][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.418][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.419][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.420][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.421][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.421][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.422][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.423][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.423][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.424][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.425][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.426][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.426][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.427][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.428][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.428][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.429][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.430][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.430][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.431][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.432][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.433][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.433][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.434][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:55.435][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:55.435][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.436][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.437][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.437][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.438][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.439][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.440][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.440][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.441][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.442][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.442][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.443][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.444][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.445][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.446][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.447][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.447][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.448][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.449][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.450][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.451][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.451][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.452][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.454][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.454][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.455][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.456][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.456][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.457][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.458][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.496][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.499][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.530][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2022-10-15 08:09:55.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:55.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:55.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:55.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:55.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:55.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:55.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:55.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.561][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.564][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.590][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:55.591][private$selectFields]
biodb.TRACE[2022-10-15 08:09:55.592][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:55.593][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:55.593][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:55.594][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.595][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.595][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.596][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.597][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.598][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.598][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.599][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.600][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.600][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.601][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.602][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.603][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.604][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.605][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.605][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.606][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.607][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.608][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.610][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.610][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.611][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.613][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.613][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.615][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.616][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.617][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.618][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.618][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.619][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.620][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.630][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.631][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.632][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.633][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.634][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.635][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.635][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.637][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.637][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.638][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.639][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.639][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.640][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.641][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.642][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.642][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.643][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.644][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.645][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.646][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.647][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.647][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.648][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.649][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.650][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.651][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.651][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.652][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.653][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.654][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.654][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:55.655][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:55.656][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.657][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.658][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.661][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.661][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.662][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.663][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.663][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.664][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.665][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.666][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.666][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.667][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.668][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.668][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.669][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.671][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.672][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.673][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.674][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.675][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.677][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.677][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.678][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.707][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.733][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.750][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2022-10-15 08:09:55.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2022-10-15 08:09:55.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:55.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:55.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:55.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:55.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:55.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2022-10-15 08:09:55.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.776][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.779][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.804][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.810][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:55.811][private$selectFields]
biodb.TRACE[2022-10-15 08:09:55.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2022-10-15 08:09:55.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2022-10-15 08:09:55.813][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2022-10-15 08:09:55.813][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.815][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.815][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.818][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.818][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.819][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.820][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.820][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.821][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.822][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.823][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.824][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.825][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.825][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.826][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.827][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.829][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.830][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.830][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.832][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.832][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.843][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.844][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.845][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.846][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.846][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.847][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.848][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.849][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.849][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.850][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.851][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2022-10-15 08:09:55.852][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.853][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.853][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.854][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.855][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.856][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.856][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.858][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.858][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.859][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.860][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.860][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.861][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.862][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.863][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.863][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.864][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.865][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.865][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.867][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.867][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.869][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.869][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.870][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.871][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2022-10-15 08:09:55.872][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.872][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.873][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:55.874][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2022-10-15 08:09:55.874][ef$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.875][ef$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.876][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.876][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.877][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.878][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.879][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.879][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.880][ef$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.881][ef$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.881][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.882][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.883][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.884][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.884][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.885][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.886][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.887][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.888][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.888][ef$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.890][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.890][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.891][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.892][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.893][ef$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.893][ef$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.894][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2022-10-15 08:09:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2022-10-15 08:09:55.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2022-10-15 08:09:55.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2022-10-15 08:09:55.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2022-10-15 08:09:55.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2022-10-15 08:09:55.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.920][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.923][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.926][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2022-10-15 08:09:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.929][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2022-10-15 08:09:55.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.940][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2022-10-15 08:09:55.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2022-10-15 08:09:55.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2022-10-15 08:09:55.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2022-10-15 08:09:55.958][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2022-10-15 08:09:55.958][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2022-10-15 08:09:55.962][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:55.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:55.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:55.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2022-10-15 08:09:55.968][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2022-10-15 08:09:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2022-10-15 08:09:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2022-10-15 08:09:55.971][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2022-10-15 08:09:55.972][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2022-10-15 08:09:55.973][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2022-10-15 08:09:55.973][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2022-10-15 08:09:55.974][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2022-10-15 08:09:55.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2022-10-15 08:09:55.975][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2022-10-15 08:09:55.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2022-10-15 08:09:55.977][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2022-10-15 08:09:55.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 372 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 372 ]
> 
> proc.time()
   user  system elapsed 
 34.693   2.575 200.118

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.2.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.15-bioc-longtests/meat/biodbLipidmaps.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbLipidmaps/DESCRIPTION’ ... OK
* this is package ‘biodbLipidmaps’ version ‘1.2.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbLipidmaps’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK

Installation output

biodbLipidmaps.Rcheck/00install.out

* installing *source* package ‘biodbLipidmaps’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbLipidmaps)