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This page was generated on 2022-03-18 11:08:57 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for variancePartition on riesling1


To the developers/maintainers of the variancePartition package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/variancePartition.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2044/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
variancePartition 1.25.5  (landing page)
Gabriel E. Hoffman
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/variancePartition
git_branch: master
git_last_commit: 6848d7a
git_last_commit_date: 2022-01-06 15:14:40 -0400 (Thu, 06 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: variancePartition
Version: 1.25.5
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL variancePartition
StartedAt: 2022-03-17 15:58:16 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 15:59:42 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 86.2 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL variancePartition
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'variancePartition' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'calcVarPart' with signature '"negbin"': no definition for class "negbin"
in method for 'checkModelStatus' with signature '"negbin"': no definition for class "negbin"
Creating a new generic function for 'classifyTestsF' in package 'variancePartition'
** help
Loading required namespace: variancePartition
*** installing help indices
  converting help for package 'variancePartition'
    finding HTML links ... done
    ESS-method                              html  
    FMT-class                               html  
    FMT                                     html  
    FMT.ZI                                  html  
    MArrayLM2-class                         html  
    VarParCIList-class                      html  
    VarParFitList-class                     html  
    applyQualityWeights                     html  
    as.data.frame.varPartResults            html  
    as.matrix-varPartResults-method         html  
    calcVarPart-method                      html  
    canCorPairs                             html  
    classifyTestsF-MArrayLM2-method         html  
    classifyTestsF                          html  
    colinearityScore                        html  
    dot-getAllUniContrasts                  html  
    dot-isMixedModelFormula                 html  
    dot-standard_transform                  html  
    dream-method                            html  
    dscchisq                                html  
    eBayes-method                           html  
    eBayesFMT                               html  
    extractVarPart                          html  
    fitExtractVarPartModel-method           html  
    fitVarPartModel-method                  html  
    getContrast-method                      html  
    getTreat-method                         html  
    get_prediction-method                   html  
    ggColorHue                              html  
    isRunableFormula                        html  
    makeContrastsDream                      html  
    plotCompareP-method                     html  
    plotContrasts                           html  
    plotCorrMatrix                          html  
    plotCorrStructure                       html  
    plotPercentBars-method                  html  
    plotStratify                            html  
    plotStratifyBy                          html  
    plotVarPart-method                      html  
    plotVarianceEstimates                   html  
    rdf.merMod                              html  
    rdf_from_matrices                       html  
    reOnly                                  html  
    residuals-MArrayLM-method               html  
    residuals-MArrayLM2-method              html  
    residuals-VarParFitList-method          html  
    residuals.MArrayLM2                     html  
    shrinkageMetric                         html  
    sortCols-method                         html  
    subset.MArrayLM2-method                 html  
    toptable-method                         html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-variancePartition/00new/variancePartition/help/toptable+2CFMT-method.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-variancePartition/00new/variancePartition/help/toptable+2CMArrayLM2-method.html
    varParFrac-class                        html  
    varPartConfInf                          html  
    varPartDEdata                           html  
    varPartData                             html  
    varPartResults-class                    html  
    voomWithDreamWeights                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (variancePartition)
Making 'packages.html' ... done