Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:54 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the twoddpcr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/twoddpcr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 2074/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
twoddpcr 1.20.0 (landing page) Anthony Chiu
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: twoddpcr |
Version: 1.20.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings twoddpcr_1.20.0.tar.gz |
StartedAt: 2022-10-19 09:16:02 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 09:19:43 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 221.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: twoddpcr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:twoddpcr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings twoddpcr_1.20.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/twoddpcr.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘twoddpcr/DESCRIPTION’ ... OK * this is package ‘twoddpcr’ version ‘1.20.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘twoddpcr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed knnClassify 14.703 0.156 15.011 ggplot.well 9.208 0.330 9.598 gridClassify 7.497 0.147 7.702 flatPlot 6.587 0.276 6.966 dropletPlot 6.479 0.198 7.272 renormalisePlate 5.312 0.099 5.440 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
twoddpcr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL twoddpcr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘twoddpcr’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (twoddpcr)
twoddpcr.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin17.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(twoddpcr) > > test_check("twoddpcr") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 155 ] > > proc.time() user system elapsed 11.783 0.523 12.691
twoddpcr.Rcheck/twoddpcr-Ex.timings
name | user | system | elapsed | |
amplitudes | 0.789 | 0.029 | 0.838 | |
basicsSummary | 0.011 | 0.000 | 0.011 | |
castSummary | 0.039 | 0.004 | 0.043 | |
classCov | 0.101 | 0.010 | 0.110 | |
classMeans | 0.115 | 0.016 | 0.132 | |
classStats | 0.134 | 0.016 | 0.150 | |
clusterCentres | 1.282 | 0.049 | 1.333 | |
copiesSummary | 0.011 | 0.001 | 0.012 | |
ddpcrPlate-class | 0.515 | 0.015 | 0.555 | |
ddpcrWell-class | 0.045 | 0.004 | 0.062 | |
ddpcrWell-methods | 0.505 | 0.006 | 0.599 | |
dropletPlot | 6.479 | 0.198 | 7.272 | |
exportTable | 0.290 | 0.017 | 0.337 | |
extractPlateName | 0.001 | 0.000 | 0.001 | |
extractWellNames | 0.001 | 0.000 | 0.001 | |
facetPlot | 3.793 | 0.102 | 3.925 | |
flatPlot | 6.587 | 0.276 | 6.966 | |
fullCopiesSummary | 0.031 | 0.006 | 0.037 | |
fullCountsSummary | 0.062 | 0.005 | 0.068 | |
ggplot.well | 9.208 | 0.330 | 9.598 | |
gridClassify | 7.497 | 0.147 | 7.702 | |
heatPlot | 2.395 | 0.063 | 2.466 | |
kmeansClassify | 2.027 | 0.053 | 2.089 | |
knnClassify | 14.703 | 0.156 | 15.011 | |
mahalanobisRain | 1.121 | 0.043 | 1.167 | |
mutantCopiesSummary | 0.008 | 0.001 | 0.009 | |
numDroplets | 0.472 | 0.005 | 0.480 | |
parseClusterCounts | 0.026 | 0.001 | 0.029 | |
plateClassification | 2.059 | 0.032 | 2.103 | |
plateClassificationMethod | 0.706 | 0.005 | 0.712 | |
plateSummary | 2.571 | 0.010 | 2.591 | |
positiveCounts | 0.046 | 0.000 | 0.046 | |
readCSVDataFrame | 0.024 | 0.003 | 0.027 | |
relabelClasses | 0.361 | 0.010 | 0.372 | |
removeDropletClasses | 0.974 | 0.027 | 1.003 | |
renormalisePlate | 5.312 | 0.099 | 5.440 | |
sdRain | 4.229 | 0.030 | 4.310 | |
setChannelNames | 0.002 | 0.001 | 0.003 | |
setDropletVolume | 0.001 | 0.000 | 0.001 | |
sortDataFrame | 0.004 | 0.000 | 0.004 | |
sortWells | 0.489 | 0.003 | 0.496 | |
thresholdClassify | 2.904 | 0.021 | 2.967 | |
wellClassification | 0.036 | 0.000 | 0.038 | |
wellClassificationMethod | 0.095 | 0.003 | 0.098 | |
whiteTheme | 2.099 | 0.041 | 2.180 | |
wildTypeCopiesSummary | 0.009 | 0.000 | 0.009 | |