Konstantin Krismer
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/transite |
| git_branch: master |
| git_last_commit: 0fda35c |
| git_last_commit_date: 2021-11-13 09:50:24 -0400 (Sat, 13 Nov 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:54 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the transite package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/transite.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1992/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| transite 1.13.1 (landing page) Konstantin Krismer
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: transite |
| Version: 1.13.1 |
| Command: rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=transite.buildbin-libdir transite_1.13.1.tar.gz |
| StartedAt: 2022-03-17 21:45:37 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:46:52 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 74.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: transite_1.13.1.zip |
| PackageFileSize: 1.39 MiB |
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### Running command:
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### rm -rf transite.buildbin-libdir && mkdir transite.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=transite.buildbin-libdir transite_1.13.1.tar.gz
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* installing *source* package 'transite' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c scoring.cpp -o scoring.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o transite.dll tmp.def RcppExports.o scoring.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/transite.buildbin-libdir/00LOCK-transite/00new/transite/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'transite'
finding HTML links ... done
RBPMotif-class html
SpectrumScore-class html
calculate_kmer_enrichment html
calculate_local_consistency html
calculate_motif_enrichment html
calculate_transcript_mc html
check_kmers html
classify_spectrum html
compute_kmer_enrichment html
count_homopolymer_corrected_kmers html
create_kmer_motif html
create_matrix_motif html
draw_volcano_plot html
estimate_significance html
estimate_significance_core html
ge html
generate_iupac_by_kmers html
generate_iupac_by_matrix html
generate_kmers html
generate_kmers_from_iupac html
generate_permuted_enrichments html
geometric_mean html
get_motif_by_id html
get_motif_by_rbp html
get_motifs html
get_motifs_meta_info html
get_ppm html
init_iupac_lookup_table html
kmers_enrichment html
motifs html
p_combine html
run_kmer_spma html
run_kmer_tsma html
run_matrix_spma html
run_matrix_tsma html
score_sequences html
score_spectrum html
score_transcripts html
score_transcripts_single_motif html
set_motifs html
subdivide_data html
toy_motif_matrix html
transite html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'transite' as transite_1.13.1.zip
* DONE (transite)