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This page was generated on 2022-03-18 11:08:49 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for switchBox on riesling1


To the developers/maintainers of the switchBox package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/switchBox.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1921/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
switchBox 1.31.0  (landing page)
Bahman Afsari , Luigi Marchionni
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/switchBox
git_branch: master
git_last_commit: 3a598ae
git_last_commit_date: 2021-10-26 12:15:40 -0400 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: switchBox
Version: 1.31.0
Command: rm -rf switchBox.buildbin-libdir && mkdir switchBox.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=switchBox.buildbin-libdir switchBox_1.31.0.tar.gz
StartedAt: 2022-03-17 21:43:38 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 21:45:02 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 84.1 seconds
RetCode: 0
Status:   OK  
PackageFile: switchBox_1.31.0.zip
PackageFileSize: 702.6 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf switchBox.buildbin-libdir && mkdir switchBox.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=switchBox.buildbin-libdir switchBox_1.31.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'switchBox' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c CalculateSignedScoreCore.cc -o CalculateSignedScoreCore.o
CalculateSignedScoreCore.cc: In function 'void CalculateSignedScoreCore(int*, int*, double*, int*, double*, int*, double*, double*, double*, double*, double*, double*, double*)':
CalculateSignedScoreCore.cc:36:26: warning: variable 'pairsNo' set but not used [-Wunused-but-set-variable]
     int i,j,l,countplace,pairsNo;
                          ^~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c CalculateSignedScoreCoreTieHandler.cc -o CalculateSignedScoreCoreTieHandler.o
CalculateSignedScoreCoreTieHandler.cc: In function 'void CalculateSignedScoreCoreTieHandler(int*, int*, double*, int*, double*, int*, double*, double*, double*, double*)':
CalculateSignedScoreCoreTieHandler.cc:49:12: warning: unused variable 'score1' [-Wunused-variable]
     double score1, score2, type;
            ^~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c CalculateSignedScoreRestrictedPairsCore.cc -o CalculateSignedScoreRestrictedPairsCore.o
CalculateSignedScoreRestrictedPairsCore.cc: In function 'void CalculateSignedScoreRestrictedPairsCore(int*, int*, double*, int*, double*, int*, int*, int*, int*, double*, double*, double*)':
CalculateSignedScoreRestrictedPairsCore.cc:22:11: warning: variable 'countplace' set but not used [-Wunused-but-set-variable]
   int i,l,countplace,pairsNo;
           ^~~~~~~~~~
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c CalculateSignedScoreRestrictedPairsCoreTieHandler.cc -o CalculateSignedScoreRestrictedPairsCoreTieHandler.o
CalculateSignedScoreRestrictedPairsCoreTieHandler.cc: In function 'void CalculateSignedScoreRestrictedPairsCoreTieHandler(int*, int*, double*, int*, double*, int*, int*, int*, int*, double*, double*, double*, double*)':
CalculateSignedScoreRestrictedPairsCoreTieHandler.cc:25:11: warning: unused variable 'countplace' [-Wunused-variable]
   int i,l,countplace,pairsNo;
           ^~~~~~~~~~
CalculateSignedScoreRestrictedPairsCoreTieHandler.cc:35:10: warning: unused variable 'score1' [-Wunused-variable]
   double score1, score2, type;
          ^~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rinit.c -o rinit.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c vect2compC.cc -o vect2compC.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o switchBox.dll tmp.def CalculateSignedScoreCore.o CalculateSignedScoreCoreTieHandler.o CalculateSignedScoreRestrictedPairsCore.o CalculateSignedScoreRestrictedPairsCoreTieHandler.o rinit.o vect2compC.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/switchBox.buildbin-libdir/00LOCK-switchBox/00new/switchBox/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'switchBox'
    finding HTML links ... done
    KTSP.Classify                           html  
    KTSP.Train                              html  
    SWAP.Calculate.BasicTSPScores           html  
    SWAP.Calculate.SignedTSPScores          html  
    SWAP.CalculateScores                    html  
    SWAP.CalculateSignedScore               html  
    SWAP.Filter.Wilcoxon                    html  
    SWAP.GetKTSP.PredictionStats            html  
    SWAP.GetKTSP.Result                     html  
    SWAP.GetKTSP.TrainTestResults           html  
    SWAP.KTSP.CV                            html  
    SWAP.KTSP.Classify                      html  
    SWAP.KTSP.LOO                           html  
    SWAP.KTSP.Statistic                     html  
    SWAP.KTSP.Train                         html  
    SWAP.Kby.Measurement                    html  
    SWAP.Kby.Ttest                          html  
    SWAP.MakeTSPTable                       html  
    SWAP.PlotKTSP.GenePairBoxplot           html  
    SWAP.PlotKTSP.GenePairClassesBoxplot    html  
    SWAP.PlotKTSP.GenePairScatter           html  
    SWAP.PlotKTSP.Genes                     html  
    SWAP.PlotKTSP.TrainTestROC              html  
    finding level-2 HTML links ... done

Rd warning: D:/biocbuild/bbs-3.15-bioc/tmpdir/RtmpolivGT/R.INSTALL2865012c06bfb/switchBox/man/SWAP.PlotKTSP.TrainTestROC.Rd:35: missing link 'SWAP.GetkTSPTrainTestResults'
    SWAP.PlotKTSP.Votes                     html  
    SWAP.Train.1TSP                         html  
    SWAP.Train.KTSP                         html  
    matTesting                              html  
    matTraining                             html  
    switchBox-package                       html  
    testingGroup                            html  
    trainingGroup                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'switchBox' as switchBox_1.31.0.zip
* DONE (switchBox)