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### Running command:
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###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL rsbml
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'rsbml' ...
** using staged installation

   **********************************************
   WARNING: this package has a configure script
         It probably needs manual configuration
   **********************************************


** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c StringMap.c -o StringMap.o
In file included from C:/libsbml/x64/include/sbml/common/common.h:117,
                 from StringMap.c:52:
C:/libsbml/x64/include/sbml/util/util.h:369:7: warning: 'finite' redeclared without dllimport attribute: previous dllimport ignored [-Wattributes]
   int finite (double d);
       ^~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c check.c -o check.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c doc.c -o doc.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c dom.c -o dom.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c graph.c -o graph.o
graph.c: In function 'rsbml_build_graph':
graph.c:55:57: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
     StringMap_put(id_map, CHAR(STRING_ELT(r_nodes, i)), (void *)i);
                                                         ^
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c init.c -o init.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c io.c -o io.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c layoutWrappers.cpp -o layoutWrappers.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c mathml.c -o mathml.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_R_=1 -DUSE_R=1 -IC:/libsbml/x64/include -IC:/libsbml/x64/include/expat -ID:/biocbuild/bbs-3.15-bioc/R/include -DLIBSBML3    -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c simulate.c -o simulate.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o layoutWrappers.o mathml.o simulate.o -LC:/libsbml/x64/bin -lsbml -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
mkdir -p D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-rsbml/00new/rsbml/libs/x64
cp C:/libsbml/x64/bin/*.dll D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-rsbml/00new/rsbml/libs//x64
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-rsbml/00new/rsbml/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'rsbml'
    finding HTML links ... done
    AlgebraicRule-class                     html  
    AssignmentRule-class                    html  
    BoundingBox-class                       html  
    CVTerm-class                            html  
    Compartment-class                       html  
    CompartmentGlyph-class                  html  
    CompartmentType-class                   html  
    CompartmentVolumeRule-class             html  
    Constraint-class                        html  
    CubicBezier-class                       html  
    Curve-class                             html  
    Delay-class                             html  
    Describable-class                       html  
    Dimensions-class                        html  
    Event-class                             html  
    EventAssignment-class                   html  
    Experiment-class                        html  
    FunctionDefinition-class                html  
    GraphicalObject-class                   html  
    InitialAssignment-class                 html  
    KineticLaw-class                        html  
    Layout-class                            html  
    LineSegment-class                       html  
    Model-class                             html  
    ModelCreator-class                      html  
    ModelHistory-class                      html  
    ModifierSpeciesReference-class          html  
    Parameter-class                         html  
    ParameterRule-class                     html  
    Point-class                             html  
    RateRule-class                          html  
    Reaction-class                          html  
    ReactionGlyph-class                     html  
    Rule-class                              html  
    SBML-class                              html  
    SBMLDocument-class                      html  
    SBMLProblem-class                       html  
    SBMLProblems-class                      html  
    SBase-class                             html  
    SOSDesign-class                         html  
    SOSExperiment-class                     html  
    SOSProtocol-class                       html  
    SOSResult-class                         html  
    SOSSubject-class                        html  
    SimpleSpeciesReference-class            html  
    Species-class                           html  
    SpeciesConcentrationRule-class          html  
    SpeciesGlyph-class                      html  
    SpeciesReference-class                  html  
    SpeciesReferenceGlyph-class             html  
    SpeciesType-class                       html  
    StoichiometryMath-class                 html  
    TextGlyph-class                         html  
    Trigger-class                           html  
    Unit-class                              html  
    UnitDefinition-class                    html  
    math                                    html  
    read                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rsbml)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'OCplus' is missing or broken
 done