Mike Smith
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/rhdf5 |
| git_branch: master |
| git_last_commit: 7fdd4e2 |
| git_last_commit_date: 2022-03-09 07:42:37 -0400 (Wed, 09 Mar 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:08:29 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the rhdf5 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rhdf5.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1605/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rhdf5 2.39.6 (landing page) Mike Smith
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: rhdf5 |
| Version: 2.39.6 |
| Command: rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5.buildbin-libdir rhdf5_2.39.6.tar.gz |
| StartedAt: 2022-03-17 21:33:40 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:34:57 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 77.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: rhdf5_2.39.6.zip |
| PackageFileSize: 4.666 MiB |
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### Running command:
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### rm -rf rhdf5.buildbin-libdir && mkdir rhdf5.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=rhdf5.buildbin-libdir rhdf5_2.39.6.tar.gz
###
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* installing *source* package 'rhdf5' ...
** using staged installation
** libs
Warning: this package has a non-empty 'configure.win' file,
so building only the main architecture
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5.c -o H5.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5A.c -o H5A.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5D.c -o H5D.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5E.c -o H5E.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5F.c -o H5F.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5G.c -o H5G.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5I.c -o H5I.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5L.c -o H5L.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5O.c -o H5O.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5P.c -o H5P.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5R.c -o H5R.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5S.c -o H5S.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5S_extras.c -o H5S_extras.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5T.c -o H5T.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5Z.c -o H5Z.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c H5constants.c -o H5constants.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c HandleList.cpp -o HandleList.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c HandleListWrap.c -o HandleListWrap.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c bit64conversion.c -o bit64conversion.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c external_filters.c -o external_filters.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c h5dump.c -o h5dump.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c h5ls.c -o h5ls.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c h5testLock.c -o h5testLock.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c h5writeDataFrame.c -o h5writeDataFrame.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c printdatatype.c -o printdatatype.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c utils.c -o utils.o
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D__USE_MINGW_ANSI_STDIO -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/include' -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c wrap.c -o wrap.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o rhdf5.dll tmp.def H5.o H5A.o H5D.o H5E.o H5F.o H5G.o H5I.o H5L.o H5O.o H5P.o H5R.o H5S.o H5S_extras.o H5T.o H5Z.o H5constants.o HandleList.o HandleListWrap.o bit64conversion.o external_filters.o h5dump.o h5ls.o h5testLock.o h5writeDataFrame.o printdatatype.o utils.o wrap.o -LD:/biocbuild/bbs-3.15-bioc/R/library/Rhdf5lib/lib/x64 -lhdf5 -lcurl -lssh2 -lssl -lcrypto -lwldap32 -lws2_32 -lcrypt32 -lszip -lz -lpsapi -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/rhdf5.buildbin-libdir/00LOCK-rhdf5/00new/rhdf5/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'rhdf5'
finding HTML links ... done
H5Aclose html
H5Acreate html
H5Adelete html
H5Aexists html
H5Aget_name html
H5Aget_space html
H5Aget_type html
H5Aopen html
H5Aread html
H5Awrite html
H5Dchunk_dims html
H5Dclose html
H5Dcreate html
H5Dget_create_plist html
H5Dget_space html
H5Dget_storage_size html
H5Dget_type html
H5Dopen html
H5Dread html
H5Dset_extent html
H5Dwrite html
H5Fclose html
H5Fcreate html
H5Fflush html
H5Fget_filesize html
H5Fget_name html
H5Fget_plist html
H5Fis_hdf5 html
H5Fopen html
H5Gclose html
H5Gcreate html
H5Gcreate_anon html
H5Gget_info html
H5Gopen html
H5IdComponent-class html
H5Iget_name html
H5Iget_type html
H5Iis_valid html
H5Lcopy html
H5Lcreate_external html
H5Ldelete html
H5Lexists html
H5Lget_info html
H5Lmove html
H5Oclose html
H5Oget_num_attrs html
H5Olink html
H5Oopen html
H5P_chunk html
H5P_chunk_cache html
H5P_fill_time html
H5P_fill_value html
H5P_filters html
H5P_istore_k html
H5P_layout html
H5P_libver_bounds html
H5P_shared_mesg_nindexes html
H5P_shared_mesg_phase_change html
H5P_sizes html
H5P_sym_k html
H5P_userblock html
H5Pclose html
H5Pcopy html
H5Pcreate html
H5Pfill_value_defined html
H5Pget_class html
H5Pget_version html
H5Pobject_track_times html
H5Pset_blosc html
H5Pset_bzip2 html
H5Pset_deflate html
H5Pset_fapl_ros3 html
H5Pset_lzf html
H5Pset_nbit html
H5Pset_shuffle html
H5Pset_szip html
H5Pshared_mesg_index html
H5R html
H5Rcreate html
H5Rdereference html
H5Ref-class html
H5Rget_name html
H5Rget_obj_type html
H5Rget_region html
H5Sclose html
H5Scombine_hyperslab html
H5Scombine_select html
H5Scopy html
H5Screate html
H5Screate_simple html
H5Sget_select_npoints html
H5Sget_simple_extent_dims html
H5Sis_simple html
H5Sselect_all html
H5Sselect_hyperslab html
H5Sselect_index html
H5Sselect_none html
H5Sselect_valid html
H5Sset_extent_simple html
H5Sunlimited html
H5T_cset html
H5T_precision html
H5T_size html
H5T_strpad html
H5Tcopy html
H5Tis_variable_str html
H5Zfilter_avail html
H5functions html
h5_FileLocking html
h5_createAttribute html
h5_createDataset html
h5_createFile html
h5_createGroup html
h5_delete html
h5_deleteAttribute html
h5_dump html
h5_errorHandling html
h5_read html
h5_readAttributes html
h5_save html
h5_set_extent html
h5_write html
h5_writeAttribute html
h5checkFilters html
h5closeAll html
h5constants html
h5listObjects html
h5ls html
h5version html
rhdf5 html
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'rhdf5' as rhdf5_2.39.6.zip
* DONE (rhdf5)