##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r rfPred -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data rfPred
###
##############################################################################
##############################################################################


* checking for file 'rfPred/DESCRIPTION' ... OK
* preparing 'rfPred':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vignette.Rnw' using Sweave
Loading required package: Rsamtools
Loading required package: GenomeInfoDb
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:base':

    strsplit

Loading required package: data.table

Attaching package: 'data.table'

The following object is masked from 'package:GenomicRanges':

    shift

The following object is masked from 'package:IRanges':

    shift

The following objects are masked from 'package:S4Vectors':

    first, second

Loading required package: parallel

[E::hts_open_format] Failed to open file http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
 chunk 4 
Error : scanTabix: failed to open file: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
 path: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz
 index: http://www.sbim.fr/rfPred/all_chr_rfPred.txtz.tbi

--- failed re-building 'vignette.Rnw'

SUMMARY: processing the following file failed:
  'vignette.Rnw'

Error: Vignette re-building failed.
Execution halted