| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:23:30 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the proDA package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/proDA.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1499/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| proDA 1.10.0 (landing page) Constantin Ahlmann-Eltze
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: proDA |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:proDA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings proDA_1.10.0.tar.gz |
| StartedAt: 2022-10-19 06:24:02 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 06:32:27 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 504.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: proDA.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:proDA.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings proDA_1.10.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/proDA.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘proDA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘proDA’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘proDA’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
test_diff 6.2 0.035 6.246
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
proDA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL proDA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘proDA’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (proDA)
proDA.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(proDA)
>
> test_check("proDA")
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 126 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• Very slow (1)
[ FAIL 0 | WARN 0 | SKIP 1 | PASS 126 ]
>
> proc.time()
user system elapsed
249.313 1.185 250.818
proDA.Rcheck/proDA-Ex.timings
| name | user | system | elapsed | |
| abundances | 2.015 | 0.102 | 2.122 | |
| as_replicate | 0 | 0 | 0 | |
| cash-proDAFit-method | 1.551 | 0.008 | 1.560 | |
| coefficient_variance_matrices | 1.541 | 0.005 | 1.547 | |
| coefficients | 1.499 | 0.004 | 1.504 | |
| convergence | 1.500 | 0.004 | 1.506 | |
| dist_approx | 2.574 | 0.009 | 2.586 | |
| dist_approx_impl | 2.380 | 0.007 | 2.389 | |
| feature_parameters | 1.409 | 0.002 | 1.413 | |
| generate_synthetic_data | 0.057 | 0.001 | 0.058 | |
| hyper_parameters | 1.474 | 0.003 | 1.479 | |
| invprobit | 0.007 | 0.001 | 0.008 | |
| median_normalization | 0.006 | 0.001 | 0.007 | |
| mply_dbl | 0.008 | 0.001 | 0.008 | |
| pd_lm | 0.021 | 0.001 | 0.022 | |
| pd_row_t_test | 3.483 | 0.014 | 3.504 | |
| proDA | 3.598 | 0.007 | 3.609 | |
| reference_level | 1.297 | 0.003 | 1.300 | |
| result_names | 1.480 | 0.002 | 1.485 | |
| test_diff | 6.200 | 0.035 | 6.246 | |