Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:21:54 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the muscat package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/muscat.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1285/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
muscat 1.10.1 (landing page) Helena L. Crowell
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: muscat |
Version: 1.10.1 |
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:muscat.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings muscat_1.10.1.tar.gz |
StartedAt: 2022-10-19 02:15:32 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 02:23:34 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 481.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: muscat.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:muscat.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings muscat_1.10.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/muscat.Rcheck' * using R version 4.2.1 (2022-06-23 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'muscat/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'muscat' version '1.10.1' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'muscat' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed simData 13.44 0.21 13.70 prepSim 11.84 0.08 11.94 mmDS 10.88 0.26 11.14 pbHeatmap 8.16 0.08 8.24 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
muscat.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL muscat ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'muscat' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading Warning in checkMatrixPackageVersion() : Package version inconsistency detected. TMB was built with Matrix version 1.4.1 Current Matrix version is 1.5.1 Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package Warning in checkDepPackageVersion(dep_pkg = "TMB") : Package version inconsistency detected. glmmTMB was built with TMB version 1.9.0 Current TMB version is 1.9.1 Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information) ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in checkMatrixPackageVersion() : Package version inconsistency detected. TMB was built with Matrix version 1.4.1 Current Matrix version is 1.5.1 Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package Warning in checkDepPackageVersion(dep_pkg = "TMB") : Package version inconsistency detected. glmmTMB was built with TMB version 1.9.0 Current TMB version is 1.9.1 Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information) ** testing if installed package can be loaded from final location Warning in checkMatrixPackageVersion() : Package version inconsistency detected. TMB was built with Matrix version 1.4.1 Current Matrix version is 1.5.1 Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package Warning in checkDepPackageVersion(dep_pkg = "TMB") : Package version inconsistency detected. glmmTMB was built with TMB version 1.9.0 Current TMB version is 1.9.1 Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information) ** testing if installed package keeps a record of temporary installation path * DONE (muscat)
muscat.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(muscat) Warning messages: 1: In checkMatrixPackageVersion() : Package version inconsistency detected. TMB was built with Matrix version 1.4.1 Current Matrix version is 1.5.1 Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package 2: In checkDepPackageVersion(dep_pkg = "TMB") : Package version inconsistency detected. glmmTMB was built with TMB version 1.9.0 Current TMB version is 1.9.1 Please re-install glmmTMB from source or restore original 'TMB' package (see '?reinstalling' for more information) > > test_check("muscat") [ FAIL 0 | WARN 2 | SKIP 0 | PASS 551 ] [ FAIL 0 | WARN 2 | SKIP 0 | PASS 551 ] > > proc.time() user system elapsed 128.43 2.23 130.68
muscat.Rcheck/muscat-Ex.timings
name | user | system | elapsed | |
aggregateData | 3.41 | 0.04 | 3.45 | |
calcExprFreqs | 0.64 | 0.04 | 0.67 | |
data | 0 | 0 | 0 | |
mmDS | 10.88 | 0.26 | 11.14 | |
pbDS | 1.56 | 0.05 | 1.61 | |
pbFlatten | 0.97 | 0.01 | 0.98 | |
pbHeatmap | 8.16 | 0.08 | 8.24 | |
pbMDS | 1.04 | 0.06 | 1.11 | |
prepSCE | 1.03 | 0.05 | 1.07 | |
prepSim | 11.84 | 0.08 | 11.94 | |
resDS | 2.99 | 0.01 | 3.00 | |
simData | 13.44 | 0.21 | 13.70 | |