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This page was generated on 2022-03-18 11:08:05 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for motifbreakR on riesling1


To the developers/maintainers of the motifbreakR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/motifbreakR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1206/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifbreakR 2.9.1  (landing page)
Simon Gert Coetzee
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/motifbreakR
git_branch: master
git_last_commit: 9958f30
git_last_commit_date: 2021-11-17 09:15:02 -0400 (Wed, 17 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: motifbreakR
Version: 2.9.1
Command: chmod a+r motifbreakR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data motifbreakR
StartedAt: 2022-03-17 17:24:12 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 17:28:10 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 237.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r motifbreakR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data motifbreakR
###
##############################################################################
##############################################################################


* checking for file 'motifbreakR/DESCRIPTION' ... OK
* preparing 'motifbreakR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'motifbreakR-vignette.Rmd' using rmarkdown
Loading required package: grid
Loading required package: MotifDb
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename,
    cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
    intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int,
    pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows

Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: Biostrings
Loading required package: XVector

Attaching package: 'Biostrings'

The following object is masked from 'package:grid':

    pattern

The following object is masked from 'package:base':

    strsplit

See system.file("LICENSE", package="MotifDb") for use restrictions.
Loading required package: rtracklayer
Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : 
  argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : 
  argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Execution halted
Execution halted
Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : 
  argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Execution halted
Quitting from lines 226-232 (motifbreakR-vignette.Rmd) 
Error: processing vignette 'motifbreakR-vignette.Rmd' failed with diagnostics:
error reading from connection
--- failed re-building 'motifbreakR-vignette.Rmd'

Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL : 
  argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Execution halted
SUMMARY: processing the following file failed:
  'motifbreakR-vignette.Rmd'

Error: Vignette re-building failed.
Execution halted
Error in serialize(data, node$con) : error writing to connection
Calls: <Anonymous> ... .send_to -> <Anonymous> -> sendData.SOCKnode -> serialize