This page was generated on 2022-03-18 11:08:05 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"
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riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"
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### Running command:
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### chmod a+r motifbreakR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data motifbreakR
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* checking for file 'motifbreakR/DESCRIPTION' ... OK
* preparing 'motifbreakR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'motifbreakR-vignette.Rmd' using rmarkdown
Loading required package: grid
Loading required package: MotifDb
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename,
cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Loading required package: IRanges
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: Biostrings
Loading required package: XVector
Attaching package: 'Biostrings'
The following object is masked from 'package:grid':
pattern
The following object is masked from 'package:base':
strsplit
See system.file("LICENSE", package="MotifDb") for use restrictions.
Loading required package: rtracklayer
Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL :
argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL :
argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Execution halted
Execution halted
Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL :
argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Execution halted
Quitting from lines 226-232 (motifbreakR-vignette.Rmd)
Error: processing vignette 'motifbreakR-vignette.Rmd' failed with diagnostics:
error reading from connection
--- failed re-building 'motifbreakR-vignette.Rmd'
Error in if (value$static.fun) fun <- value$data$fun else fun <- NULL :
argument is of length zero
Calls: local ... doTryCatch -> .recv -> .recv -> .load_task_static -> .task_const
Execution halted
SUMMARY: processing the following file failed:
'motifbreakR-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Error in serialize(data, node$con) : error writing to connection
Calls: <Anonymous> ... .send_to -> <Anonymous> -> sendData.SOCKnode -> serialize