John R. Stevens
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/metahdep |
| git_branch: master |
| git_last_commit: f753e6f |
| git_last_commit_date: 2021-10-26 11:53:35 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:59 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the metahdep package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metahdep.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1105/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metahdep 1.53.0 (landing page) John R. Stevens
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: metahdep |
| Version: 1.53.0 |
| Command: rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=metahdep.buildbin-libdir metahdep_1.53.0.tar.gz |
| StartedAt: 2022-03-17 21:20:01 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:21:07 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 66.2 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: metahdep_1.53.0.zip |
| PackageFileSize: 572.8 KiB |
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### Running command:
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### rm -rf metahdep.buildbin-libdir && mkdir metahdep.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=metahdep.buildbin-libdir metahdep_1.53.0.tar.gz
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* installing *source* package 'metahdep' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c metahdep.c -o metahdep.o
In file included from metahdep.c:3:
metahdep.c: In function 'get_row_indices2':
D:/biocbuild/bbs-3.15-bioc/R/include/Rinternals.h:197:17: warning: passing argument 5 of 'metan_binary_search_unique' makes integer from pointer without a cast [-Wint-conversion]
#define CHAR(x) R_CHAR(x)
^~~~~~~~~
metahdep.c:471:79: note: in expansion of macro 'CHAR'
index = metan_binary_search_unique(name_list, sort_index, R_old_names, j, CHAR(STRING_ELT(R_old_chipsets, j)), i);
^~~~
metahdep.c:372:103: note: expected 'char' but argument is of type 'const char *'
SEXP metan_binary_search_unique(SEXP name_list, SEXP sort_index, SEXP gene_name, int gene_index, char chipset_name, int study_num)
~~~~~^~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o metahdep.dll tmp.def metahdep.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/metahdep.buildbin-libdir/00LOCK-metahdep/00new/metahdep/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'metahdep'
finding HTML links ... done
ES.obj-class html
HGU.DifExp.list html
HGU.newnames html
HGU.prep.list html
getPLM.es html
gloss html
metahdep.FEMA html
metahdep.HBLM html
metahdep.REMA html
metahdep html
metahdep.format html
metahdep.other html
metaprep-class html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'metahdep' as metahdep_1.53.0.zip
* DONE (metahdep)