Florian P Breitwieser
| Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022) |
| git_url: https://git.bioconductor.org/packages/isobar |
| git_branch: master |
| git_last_commit: b3b8f9b |
| git_last_commit_date: 2021-10-26 12:01:00 -0400 (Tue, 26 Oct 2021) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-03-18 11:07:50 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the isobar package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/isobar.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 963/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| isobar 1.41.0 (landing page) Florian P Breitwieser
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: isobar |
| Version: 1.41.0 |
| Command: rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=isobar.buildbin-libdir isobar_1.41.0.tar.gz |
| StartedAt: 2022-03-17 21:16:19 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 21:17:46 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 86.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: isobar_1.41.0.zip |
| PackageFileSize: 4.088 MiB |
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### Running command:
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### rm -rf isobar.buildbin-libdir && mkdir isobar.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=isobar.buildbin-libdir isobar_1.41.0.tar.gz
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* installing *source* package 'isobar' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
in method for 'coerce' with signature '"MSnSet","IBSpectra"': no definition for class "MSnSet"
in method for 'coerce' with signature '"IBSpectra","MSnSet"': no definition for class "MSnSet"
Note: possible error in 'png(sprintf("pairwise_correlation_%s.png", ': unused argument (title = "Pairwise Correlation plot")
** help
*** installing help indices
converting help for package 'isobar'
finding HTML links ... done
IBSpectra-class html
finding level-2 HTML links ... done
NoiseModel-class html
ProteinGroup-class html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/isobar.buildbin-libdir/00LOCK-isobar/00new/isobar/help/ProteinGroup.html
TlsParameter-class html
Tlsd-class html
calc.delta.score html
calc.startpos html
calculate-pvalues html
calculate.dNSAF html
calculate.emPAI html
correct.peptide.ratios html
distr-methods html
fit-distr html
getPeptideModifContext html
getPhosphoRSProbabilities html
getPtmInfo html
groupMemberPeptides html
human.protein.names html
isobar-analysis html
isobar-data html
isobar-import html
isobar-log html
isobar-package html
isobar-plots html
isobar-preprocessing html
isobar-reports html
maplot.protein html
number.ranges html
observedKnownSites html
peptide.count html
proteinInfo-methods html
proteinNameAndDescription html
ratio-summ html
ratiosReshapeWide html
reporter.protein-methods html
sanitize html
shared.ratios html
shared.ratios.sign html
specificities html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/isobar.buildbin-libdir/00LOCK-isobar/00new/isobar/help/UNSPECIFIC.html
REDIRECT:topic Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/isobar.buildbin-libdir/00LOCK-isobar/00new/isobar/help/SPECIFICITIES.html
spectra.count2 html
subsetIBSpectra html
utils html
writeHscoreData html
writeIBSpectra html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'isobar' as isobar_1.41.0.zip
* DONE (isobar)