Multiple platform build/check report for BioC 3.15 - CHECK results for graper on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 20.04.5 LTS)	x86_64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	4386
palomino3	Windows Server 2022 Datacenter	x64	4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid"	4138
merida1	macOS 10.14.6 Mojave	x86_64	4.2.1 (2022-06-23) -- "Funny-Looking Kid"	4205
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.12.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.12.0.tar.gz

StartedAt: 2022-10-19 03:10:27 -0400 (Wed, 19 Oct 2022)

EndedAt: 2022-10-19 03:12:12 -0400 (Wed, 19 Oct 2022)

EllapsedTime: 105.7 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.12.0.tar.gz
###
##############################################################################
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* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.12.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.15-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c fit_graper.cpp -o fit_graper.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.2/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-866.676
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-572.828
ELB improved by 293.848

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-515.318
ELB improved by 57.5107

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.92
ELB improved by 37.3978

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.449
ELB improved by 17.4712

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.009
ELB improved by 7.44024

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.701
ELB improved by 4.30773

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.328
ELB improved by 3.3733

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.136
ELB improved by 3.19141

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.865
ELB improved by 3.27155

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.478
ELB improved by 3.38666

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.096
ELB improved by 3.38203

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.953
ELB improved by 3.14296

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.289
ELB improved by 2.66431

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.212
ELB improved by 2.07661

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.671
ELB improved by 1.54116

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.536
ELB improved by 1.13444

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.69
ELB improved by 0.846391

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.049
ELB improved by 0.640575

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.559
ELB improved by 0.490583

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.177
ELB improved by 0.381875

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.873
ELB improved by 0.304161

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.624
ELB improved by 0.248434

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.417
ELB improved by 0.207499

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.241
ELB improved by 0.176386

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.089
ELB improved by 0.151956

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.956
ELB improved by 0.132261

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.84
ELB improved by 0.116069

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.738
ELB improved by 0.102556

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.647
ELB improved by 0.0911483

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.565
ELB improved by 0.0814285

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.492
ELB improved by 0.0730817

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.426
ELB improved by 0.0658652

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.367
ELB improved by 0.0595886

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.312
ELB improved by 0.0541001

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.263
ELB improved by 0.0492774

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.218
ELB improved by 0.0450207

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.177
ELB improved by 0.0412482

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.139
ELB improved by 0.0378921

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.104
ELB improved by 0.034896

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.072
ELB improved by 0.0322125

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.042
ELB improved by 0.0298015

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.014
ELB improved by 0.0276292

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.989
ELB improved by 0.0256667

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.965
ELB improved by 0.0238892

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.943
ELB improved by 0.0222755

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.922
ELB improved by 0.020807

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.902
ELB improved by 0.0194679

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.884
ELB improved by 0.0182442

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.867
ELB improved by 0.0171238

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.851
ELB improved by 0.0160961

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.836
ELB improved by 0.0151516

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.821
ELB improved by 0.0142823

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.808
ELB improved by 0.0134806

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.795
ELB improved by 0.0127402

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.783
ELB improved by 0.0120554

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.772
ELB improved by 0.011421

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.761
ELB improved by 0.0108324

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.751
ELB improved by 0.0102856

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.741
ELB improved by 0.00977685

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-891.61
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-618.826
ELB improved by 272.784

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-554.678
ELB improved by 64.1481

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-504.689
ELB improved by 49.9892

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.16
ELB improved by 23.5283

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.035
ELB improved by 9.12513

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.234
ELB improved by 5.80142

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.816
ELB improved by 5.41778

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.236
ELB improved by 5.57988

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.468
ELB improved by 5.76822

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.815
ELB improved by 5.65322

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.815
ELB improved by 4.99986

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.881
ELB improved by 3.93404

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.04
ELB improved by 2.84056

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.043
ELB improved by 1.99722

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.598
ELB improved by 1.44481

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.495
ELB improved by 1.1027

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.616
ELB improved by 0.879252

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.899
ELB improved by 0.716942

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.308
ELB improved by 0.591181

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.814
ELB improved by 0.49387

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.392
ELB improved by 0.421963

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.021
ELB improved by 0.3711

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.685
ELB improved by 0.335559

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.375
ELB improved by 0.310375

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.083
ELB improved by 0.292026

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.805
ELB improved by 0.278129

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.538
ELB improved by 0.267035

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.28
ELB improved by 0.25758

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.031
ELB improved by 0.248956

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.791
ELB improved by 0.24064

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.558
ELB improved by 0.232354

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.334
ELB improved by 0.224008

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.119
ELB improved by 0.215651

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.911
ELB improved by 0.207398

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.712
ELB improved by 0.199376

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.52
ELB improved by 0.191673

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.336
ELB improved by 0.184314

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.159
ELB improved by 0.177258

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.988
ELB improved by 0.170423

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.825
ELB improved by 0.163718

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.668
ELB improved by 0.157057

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.517
ELB improved by 0.150369

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.374
ELB improved by 0.143595

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.237
ELB improved by 0.136676

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.107
ELB improved by 0.129562

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.985
ELB improved by 0.122214

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.87
ELB improved by 0.114614

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.764
ELB improved by 0.106777

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.665
ELB improved by 0.0987507

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.574
ELB improved by 0.0906193

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.492
ELB improved by 0.0824931

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.417
ELB improved by 0.0744987

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.351
ELB improved by 0.0667645

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.291
ELB improved by 0.059408

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.239
ELB improved by 0.0525255

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.192
ELB improved by 0.046186

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.152
ELB improved by 0.0404293

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.117
ELB improved by 0.0352684

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.086
ELB improved by 0.0306931

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.059
ELB improved by 0.0266761

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.036
ELB improved by 0.023178

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.016
ELB improved by 0.0201528

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.999
ELB improved by 0.0175513

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.983
ELB improved by 0.0153244

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.97
ELB improved by 0.0134249

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.958
ELB improved by 0.0118089

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.948
ELB improved by 0.0104368

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.938
ELB improved by 0.00927295

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-866.67
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-589.851
ELB improved by 276.819

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-533.307
ELB improved by 56.5442

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-492.264
ELB improved by 41.0428

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-472.51
ELB improved by 19.7539

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-465.353
ELB improved by 7.1567

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.884
ELB improved by 3.46956

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.352
ELB improved by 2.53236

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.101
ELB improved by 2.25065

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.954
ELB improved by 2.14647

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.875
ELB improved by 2.07941

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.886
ELB improved by 1.98867

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.041
ELB improved by 1.84514

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.396
ELB improved by 1.64483

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.988
ELB improved by 1.40815

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.819
ELB improved by 1.1694

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.86
ELB improved by 0.958377

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.073
ELB improved by 0.787329

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.423
ELB improved by 0.650292

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.889
ELB improved by 0.533512

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.459
ELB improved by 0.429853

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.117
ELB improved by 0.342248

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.843
ELB improved by 0.274273

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.618
ELB improved by 0.224469

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.43
ELB improved by 0.188522

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.268
ELB improved by 0.162211

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.125
ELB improved by 0.14243

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.998
ELB improved by 0.127128

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.883
ELB improved by 0.114996

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.778
ELB improved by 0.105195

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.681
ELB improved by 0.0971787

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.59
ELB improved by 0.0905771

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.505
ELB improved by 0.0851313

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.424
ELB improved by 0.0806541

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.347
ELB improved by 0.0770062

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.273
ELB improved by 0.0740823

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.202
ELB improved by 0.0718014

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.131
ELB improved by 0.0701017

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.062
ELB improved by 0.0689359

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.994
ELB improved by 0.0682689

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.926
ELB improved by 0.0680756

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.858
ELB improved by 0.0683395

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.789
ELB improved by 0.069052

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.719
ELB improved by 0.0702113

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.647
ELB improved by 0.0718229

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.573
ELB improved by 0.0738985

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.496
ELB improved by 0.0764571

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.417
ELB improved by 0.0795253

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.334
ELB improved by 0.0831377

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.246
ELB improved by 0.0873384

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.154
ELB improved by 0.0921826

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.056
ELB improved by 0.0977383

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.952
ELB improved by 0.104089

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.841
ELB improved by 0.111336

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.721
ELB improved by 0.119605

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.592
ELB improved by 0.129047

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.453
ELB improved by 0.139849

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.3
ELB improved by 0.152243

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.134
ELB improved by 0.16652

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.951
ELB improved by 0.183061

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.748
ELB improved by 0.202378

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.523
ELB improved by 0.2252

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.27
ELB improved by 0.25264

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.984
ELB improved by 0.286509

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.654
ELB improved by 0.329869

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.266
ELB improved by 0.387818

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.799
ELB improved by 0.467767

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.222
ELB improved by 0.57644

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.513
ELB improved by 0.709101

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.681
ELB improved by 0.832302

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.796
ELB improved by 0.884857

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.96
ELB improved by 0.835746

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.238
ELB improved by 0.722354

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.642
ELB improved by 0.595307

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.161
ELB improved by 0.481407

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.772
ELB improved by 0.388917

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.455
ELB improved by 0.31683

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.194
ELB improved by 0.260766

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.978
ELB improved by 0.216255

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.798
ELB improved by 0.180067

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.648
ELB improved by 0.150274

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.522
ELB improved by 0.12575

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.416
ELB improved by 0.105678

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.327
ELB improved by 0.0893232

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.251
ELB improved by 0.0760003

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.186
ELB improved by 0.0651052

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.13
ELB improved by 0.0561371

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.081
ELB improved by 0.0486979

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.039
ELB improved by 0.0424783

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.001
ELB improved by 0.0372399

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.969
ELB improved by 0.0327984

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.94
ELB improved by 0.0290104

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.914
ELB improved by 0.0257625

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.891
ELB improved by 0.0229648

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.87
ELB improved by 0.0205445

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.852
ELB improved by 0.0184426

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.835
ELB improved by 0.0166106

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.82
ELB improved by 0.0150085

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.807
ELB improved by 0.0136031

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.794
ELB improved by 0.0123665

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.783
ELB improved by 0.0112754

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.773
ELB improved by 0.0103101

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.763
ELB improved by 0.00945383

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-893.067
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-576.678
ELB improved by 316.389

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-516.832
ELB improved by 59.8462

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.872
ELB improved by 38.9594

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.393
ELB improved by 17.4786

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.073
ELB improved by 9.32055

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.707
ELB improved by 7.36562

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.89
ELB improved by 7.81738

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.951
ELB improved by 8.93858

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.848
ELB improved by 9.10337

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.508
ELB improved by 7.33981

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.755
ELB improved by 4.75316

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.89
ELB improved by 2.8654

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.034
ELB improved by 1.85601

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.696
ELB improved by 1.33732

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.641
ELB improved by 1.05509

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.749
ELB improved by 0.89235

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.956
ELB improved by 0.792896

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.226
ELB improved by 0.729463

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.54
ELB improved by 0.686329

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.893
ELB improved by 0.647078

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.295
ELB improved by 0.598405

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.748
ELB improved by 0.54686

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.238
ELB improved by 0.50995

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.74
ELB improved by 0.498299

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.225
ELB improved by 0.514796

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.682
ELB improved by 0.542399

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.146
ELB improved by 0.536224

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.659
ELB improved by 0.486876

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.225
ELB improved by 0.434474

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.826
ELB improved by 0.398352

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.45
ELB improved by 0.37651

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.082
ELB improved by 0.367822

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.702
ELB improved by 0.380028

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.264
ELB improved by 0.43768

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.688
ELB improved by 0.576814

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.982
ELB improved by 0.705899

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.376
ELB improved by 0.605296

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.946
ELB improved by 0.430652

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.628
ELB improved by 0.317748

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.38
ELB improved by 0.247651

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.179
ELB improved by 0.201523

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.008
ELB improved by 0.170522

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.86
ELB improved by 0.148528

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.729
ELB improved by 0.130662

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.615
ELB improved by 0.114389

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.514
ELB improved by 0.100186

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.424
ELB improved by 0.0901539

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.338
ELB improved by 0.0862731

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.248
ELB improved by 0.0901523

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.145
ELB improved by 0.103263

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.02
ELB improved by 0.124919

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.875
ELB improved by 0.144607

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.737
ELB improved by 0.138155

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.638
ELB improved by 0.0985349

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.583
ELB improved by 0.0556283

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.553
ELB improved by 0.0301899

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.534
ELB improved by 0.0187527

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.52
ELB improved by 0.0137986

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.509
ELB improved by 0.0113586

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.499
ELB improved by 0.00989903

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  4.808   0.293   5.085

name	user	system	elapsed
coef.graper	0.075	0.014	0.090
getPIPs	0.068	0.011	0.079
graper	0.116	0.016	0.132
makeExampleData	0.019	0.002	0.021
makeExampleDataWithUnequalGroups	0.018	0.001	0.020
plotELBO	0.363	0.022	0.385
plotGroupPenalties	1.227	0.014	1.243
plotPosterior	1.303	0.075	1.380
predict.graper	2.919	0.065	2.988
print.graper	0.072	0.012	0.084

CHECK results for graper on merida1

Summary

Command output

Installation output

Tests output

Example timings