Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:21:18 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the comapr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/comapr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 384/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
comapr 1.0.0 (landing page) Ruqian Lyu
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: comapr |
Version: 1.0.0 |
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:comapr.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings comapr_1.0.0.tar.gz |
StartedAt: 2022-10-18 23:09:07 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 23:17:43 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 515.7 seconds |
RetCode: 0 |
Status: OK |
CheckDir: comapr.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:comapr.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings comapr_1.0.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/comapr.Rcheck' * using R version 4.2.1 (2022-06-23 ucrt) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'comapr/DESCRIPTION' ... OK * this is package 'comapr' version '1.0.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'comapr' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed bootstrapDist 2.31 0.04 22.68 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'testthat.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
comapr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL comapr ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'comapr' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (comapr)
comapr.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" Copyright (C) 2022 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(comapr) > > test_check("comapr") [ FAIL 0 | WARN 1 | SKIP 0 | PASS 91 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 91 ] > > proc.time() user system elapsed 45.60 1.59 143.65
comapr.Rcheck/comapr-Ex.timings
name | user | system | elapsed | |
bootstrapDist | 2.31 | 0.04 | 22.68 | |
calGeneticDist | 0.14 | 0.00 | 0.14 | |
combineHapState | 1.22 | 0.08 | 1.30 | |
correctGT | 0.01 | 0.02 | 0.03 | |
countBinState | 0.47 | 0.09 | 0.98 | |
countCOs | 0.83 | 0.03 | 0.86 | |
countGT | 0.11 | 0.00 | 0.11 | |
filterGT | 0.09 | 0.00 | 0.09 | |
findDupSamples | 0 | 0 | 0 | |
getAFTracks | 1.08 | 0.03 | 1.11 | |
getCellAFTrack | 1.14 | 0.01 | 1.16 | |
getCellCORange | 0.64 | 0.02 | 0.65 | |
getCellDPTrack | 0.52 | 0.02 | 0.53 | |
getDistortedMarkers | 0.31 | 0.01 | 0.33 | |
getMeanDPTrack | 0.05 | 0.00 | 0.05 | |
getSNPDensityTrack | 0.06 | 0.00 | 0.06 | |
perCellChrQC | 0.05 | 0.00 | 0.05 | |
perSegChrQC | 0.07 | 0.00 | 0.08 | |
permuteDist | 0.04 | 0.00 | 0.03 | |
plotCount | 0.98 | 0.00 | 0.98 | |
plotGTFreq | 0.29 | 0.00 | 0.29 | |
plotGeneticDist | 0.27 | 0.02 | 0.28 | |
plotWholeGenome | 0.29 | 0.01 | 0.30 | |
readColMM | 0 | 0 | 0 | |
readHapState | 0.10 | 0.00 | 0.11 | |