Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:07:14 -0400 (Fri, 18 Mar 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the cola package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cola.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 372/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cola 2.1.0 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: cola |
Version: 2.1.0 |
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cola.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings cola_2.1.0.tar.gz |
StartedAt: 2022-03-17 18:47:07 -0400 (Thu, 17 Mar 2022) |
EndedAt: 2022-03-17 18:50:45 -0400 (Thu, 17 Mar 2022) |
EllapsedTime: 218.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cola.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:cola.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings cola_2.1.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/cola.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'cola/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'cola' version '2.1.0' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'cola' can be installed ... OK * checking installed package size ... NOTE installed size is 8.0Mb sub-directories of 1Mb or more: data 3.5Mb extdata 1.0Mb * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files for x64 is not available File 'D:/biocbuild/bbs-3.15-bioc/R/library/cola/libs/x64/cola.dll': Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran) Found 'exit', possibly from 'exit' (C), 'stop' (Fortran) Found 'printf', possibly from 'printf' (C) Compiled code should not call entry points which might terminate R nor write to stdout/stderr instead of to the console, nor use Fortran I/O nor system RNGs. The detected symbols are linked into the code but might come from libraries and not actually be called. See 'Writing portable packages' in the 'Writing R Extensions' manual. * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed consensus_partition 1.61 0.01 29.05 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'test-all.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'D:/biocbuild/bbs-3.15-bioc/meat/cola.Rcheck/00check.log' for details.
cola.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cola ### ############################################################################## ############################################################################## * installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library' * installing *source* package 'cola' ... ** using staged installation ** libs "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c RcppExports.cpp -o RcppExports.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c atc.cpp -o atc.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c cal_consensus_mat.cpp -o cal_consensus_mat.o "C:/rtools40/mingw64/bin/"g++ -std=gnu++11 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I"C:/extsoft/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition -c pdist.cpp -o pdist.o C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o cola.dll tmp.def RcppExports.o atc.o cal_consensus_mat.o pdist.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-cola/00new/cola/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'cola' finding HTML links ... done ATC html ATC_approx html ConsensusPartition-class html ConsensusPartitionList-class html DownSamplingConsensusPartition-class html Extract.ConsensusPartitionList html Extract.HierarchicalPartition html ExtractExtract.ConsensusPartitionList html ExtractExtract.HierarchicalPartition html FCC html HierarchicalPartition-class html PAC html aPAC html adjust_matrix html adjust_outlier html all_leaves-HierarchicalPartition-method html all_nodes-HierarchicalPartition-method html all_partition_methods html all_top_value_methods html cola html cola_opt html cola_report-ConsensusPartition-method html cola_report-ConsensusPartitionList-method html cola_report-HierarchicalPartition-method html cola_report-dispatch html cola_rl html collect_classes-ConsensusPartition-method html collect_classes-ConsensusPartitionList-method html collect_classes-HierarchicalPartition-method html collect_classes-dispatch html collect_plots-ConsensusPartition-method html collect_plots-ConsensusPartitionList-method html collect_plots-dispatch html collect_stats-ConsensusPartition-method html collect_stats-ConsensusPartitionList-method html collect_stats-dispatch html colnames-ConsensusPartition-method html colnames-ConsensusPartitionList-method html colnames-DownSamplingConsensusPartition-method html colnames-HierarchicalPartition-method html colnames-dispatch html compare_partitions-ConsensusPartition-method html compare_signatures-ConsensusPartition-method html compare_signatures-HierarchicalPartition-method html compare_signatures-dispatch html concordance html config_ATC html consensus_heatmap-ConsensusPartition-method html consensus_partition html consensus_partition_by_down_sampling html correspond_between_rankings html correspond_between_two_rankings html david_enrichment html dim.ConsensusPartition html dim.ConsensusPartitionList html dim.DownSamplingConsensusPartition html dim.HierarchicalPartition html dimension_reduction-ConsensusPartition-method html dimension_reduction-DownSamplingConsensusPartition-method html dimension_reduction-HierarchicalPartition-method html dimension_reduction-dispatch html dimension_reduction-matrix-method html find_best_km html functional_enrichment-ANY-method html functional_enrichment-ConsensusPartition-method html functional_enrichment-ConsensusPartitionList-method html functional_enrichment-HierarchicalPartition-method html functional_enrichment-dispatch html get_anno-ConsensusPartition-method html get_anno-ConsensusPartitionList-method html get_anno-DownSamplingConsensusPartition-method html get_anno-HierarchicalPartition-method html get_anno-dispatch html get_anno_col-ConsensusPartition-method html get_anno_col-ConsensusPartitionList-method html get_anno_col-HierarchicalPartition-method html get_anno_col-dispatch html get_children_nodes-HierarchicalPartition-method html get_classes-ConsensusPartition-method html get_classes-ConsensusPartitionList-method html get_classes-DownSamplingConsensusPartition-method html get_classes-HierarchicalPartition-method html get_classes-dispatch html get_consensus-ConsensusPartition-method html get_matrix-ConsensusPartition-method html get_matrix-ConsensusPartitionList-method html get_matrix-HierarchicalPartition-method html get_matrix-dispatch html get_membership-ConsensusPartition-method html get_membership-ConsensusPartitionList-method html get_membership-dispatch html get_param-ConsensusPartition-method html get_signatures-ConsensusPartition-method html get_signatures-DownSamplingConsensusPartition-method html get_signatures-HierarchicalPartition-method html get_signatures-dispatch html get_stats-ConsensusPartition-method html get_stats-ConsensusPartitionList-method html get_stats-dispatch html golub_cola html golub_cola_ds html golub_cola_rh html hierarchical_partition html is_best_k-ConsensusPartition-method html is_best_k-ConsensusPartitionList-method html is_best_k-dispatch html is_leaf_node-HierarchicalPartition-method html is_stable_k-ConsensusPartition-method html is_stable_k-ConsensusPartitionList-method html is_stable_k-dispatch html knee_finder2 html knitr_add_tab_item html knitr_insert_tabs html map_to_entrez_id html max_depth-HierarchicalPartition-method html membership_heatmap-ConsensusPartition-method html merge_node-HierarchicalPartition-method html merge_node_param html ncol-ConsensusPartition-method html ncol-ConsensusPartitionList-method html ncol-DownSamplingConsensusPartition-method html ncol-HierarchicalPartition-method html ncol-dispatch html node_info-HierarchicalPartition-method html node_level-HierarchicalPartition-method html nrow-ConsensusPartition-method html nrow-ConsensusPartitionList-method html nrow-HierarchicalPartition-method html nrow-dispatch html plot_ecdf-ConsensusPartition-method html predict_classes-ConsensusPartition-method html finding level-2 HTML links ... done predict_classes-dispatch html predict_classes-matrix-method html print.hc_table_suggest_best_k html recalc_stats html register_NMF html register_SOM html register_partition_methods html register_top_value_methods html relabel_class html remove_partition_methods html remove_top_value_methods html rownames-ConsensusPartition-method html rownames-ConsensusPartitionList-method html rownames-HierarchicalPartition-method html rownames-dispatch html run_all_consensus_partition_methods html select_partition_number-ConsensusPartition-method html show-ConsensusPartition-method html show-ConsensusPartitionList-method html show-DownSamplingConsensusPartition-method html show-HierarchicalPartition-method html show-dispatch html split_node-HierarchicalPartition-method html suggest_best_k-ConsensusPartition-method html suggest_best_k-ConsensusPartitionList-method html suggest_best_k-HierarchicalPartition-method html suggest_best_k-dispatch html test_between_factors html test_to_known_factors-ConsensusPartition-method html test_to_known_factors-ConsensusPartitionList-method html test_to_known_factors-DownSamplingConsensusPartition-method html test_to_known_factors-HierarchicalPartition-method html test_to_known_factors-dispatch html top_elements_overlap html top_rows_heatmap-ConsensusPartition-method html top_rows_heatmap-ConsensusPartitionList-method html top_rows_heatmap-HierarchicalPartition-method html top_rows_heatmap-dispatch html top_rows_heatmap-matrix-method html top_rows_overlap-ConsensusPartitionList-method html top_rows_overlap-HierarchicalPartition-method html top_rows_overlap-dispatch html top_rows_overlap-matrix-method html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cola) Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'BRAIN' is missing or broken Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") : DESCRIPTION file of package 'sangerseqR' is missing or broken done
cola.Rcheck/tests/test-all.Rout
R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" Copyright (C) 2021 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > suppressWarnings(suppressPackageStartupMessages(library(cola))) > > test_check("cola") [ FAIL 0 | WARN 0 | SKIP 0 | PASS 18 ] > > > proc.time() user system elapsed 3.65 0.51 21.39
cola.Rcheck/cola-Ex.timings
name | user | system | elapsed | |
ATC | 0.03 | 0.00 | 0.03 | |
ATC_approx | 0 | 0 | 0 | |
ConsensusPartition-class | 0 | 0 | 0 | |
ConsensusPartitionList-class | 0 | 0 | 0 | |
DownSamplingConsensusPartition-class | 0 | 0 | 0 | |
Extract.ConsensusPartitionList | 0.33 | 0.02 | 0.34 | |
Extract.HierarchicalPartition | 0.11 | 0.01 | 0.12 | |
ExtractExtract.ConsensusPartitionList | 0.19 | 0.02 | 0.21 | |
ExtractExtract.HierarchicalPartition | 0 | 0 | 0 | |
FCC | 0.12 | 0.01 | 0.14 | |
HierarchicalPartition-class | 0 | 0 | 0 | |
PAC | 0.36 | 0.00 | 0.36 | |
aPAC | 0.13 | 0.00 | 0.12 | |
adjust_matrix | 0 | 0 | 0 | |
adjust_outlier | 0 | 0 | 0 | |
all_leaves-HierarchicalPartition-method | 0.09 | 0.00 | 0.09 | |
all_nodes-HierarchicalPartition-method | 0.1 | 0.0 | 0.1 | |
all_partition_methods | 0 | 0 | 0 | |
all_top_value_methods | 0 | 0 | 0 | |
cola | 0.04 | 0.00 | 0.04 | |
cola_opt | 0.03 | 0.00 | 0.03 | |
cola_report-ConsensusPartition-method | 0 | 0 | 0 | |
cola_report-ConsensusPartitionList-method | 0 | 0 | 0 | |
cola_report-HierarchicalPartition-method | 0 | 0 | 0 | |
cola_report-dispatch | 0 | 0 | 0 | |
cola_rl | 0.08 | 0.01 | 0.10 | |
collect_classes-ConsensusPartition-method | 1.47 | 0.13 | 1.59 | |
collect_classes-ConsensusPartitionList-method | 2.36 | 0.02 | 2.38 | |
collect_classes-HierarchicalPartition-method | 1.34 | 0.12 | 1.46 | |
collect_classes-dispatch | 0 | 0 | 0 | |
collect_plots-ConsensusPartition-method | 0 | 0 | 0 | |
collect_plots-ConsensusPartitionList-method | 0 | 0 | 0 | |
collect_plots-dispatch | 0 | 0 | 0 | |
collect_stats-ConsensusPartition-method | 0 | 0 | 0 | |
collect_stats-ConsensusPartitionList-method | 0.35 | 0.02 | 0.36 | |
collect_stats-dispatch | 0 | 0 | 0 | |
colnames-ConsensusPartition-method | 0 | 0 | 0 | |
colnames-ConsensusPartitionList-method | 0 | 0 | 0 | |
colnames-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
colnames-HierarchicalPartition-method | 0 | 0 | 0 | |
colnames-dispatch | 0 | 0 | 0 | |
compare_partitions-ConsensusPartition-method | 0 | 0 | 0 | |
compare_signatures-ConsensusPartition-method | 0 | 0 | 0 | |
compare_signatures-HierarchicalPartition-method | 4.33 | 0.20 | 4.54 | |
compare_signatures-dispatch | 0 | 0 | 0 | |
concordance | 0.09 | 0.03 | 0.12 | |
config_ATC | 0 | 0 | 0 | |
consensus_heatmap-ConsensusPartition-method | 0.42 | 0.02 | 0.43 | |
consensus_partition | 1.61 | 0.01 | 29.05 | |
consensus_partition_by_down_sampling | 0 | 0 | 0 | |
correspond_between_rankings | 0.08 | 0.00 | 0.11 | |
correspond_between_two_rankings | 0.03 | 0.00 | 0.03 | |
david_enrichment | 0 | 0 | 0 | |
dim.ConsensusPartition | 0 | 0 | 0 | |
dim.ConsensusPartitionList | 0 | 0 | 0 | |
dim.DownSamplingConsensusPartition | 0 | 0 | 0 | |
dim.HierarchicalPartition | 0 | 0 | 0 | |
dimension_reduction-ConsensusPartition-method | 0.89 | 0.03 | 0.92 | |
dimension_reduction-DownSamplingConsensusPartition-method | 1.60 | 0.07 | 1.65 | |
dimension_reduction-HierarchicalPartition-method | 0.62 | 0.04 | 0.68 | |
dimension_reduction-dispatch | 0 | 0 | 0 | |
dimension_reduction-matrix-method | 0 | 0 | 0 | |
find_best_km | 0 | 0 | 0 | |
functional_enrichment-ANY-method | 0 | 0 | 0 | |
functional_enrichment-ConsensusPartition-method | 0 | 0 | 0 | |
functional_enrichment-ConsensusPartitionList-method | 0 | 0 | 0 | |
functional_enrichment-HierarchicalPartition-method | 0 | 0 | 0 | |
functional_enrichment-dispatch | 0 | 0 | 0 | |
get_anno-ConsensusPartition-method | 0 | 0 | 0 | |
get_anno-ConsensusPartitionList-method | 0 | 0 | 0 | |
get_anno-DownSamplingConsensusPartition-method | 0.08 | 0.02 | 0.09 | |
get_anno-HierarchicalPartition-method | 0 | 0 | 0 | |
get_anno-dispatch | 0 | 0 | 0 | |
get_anno_col-ConsensusPartition-method | 0 | 0 | 0 | |
get_anno_col-ConsensusPartitionList-method | 0 | 0 | 0 | |
get_anno_col-HierarchicalPartition-method | 0 | 0 | 0 | |
get_anno_col-dispatch | 0 | 0 | 0 | |
get_children_nodes-HierarchicalPartition-method | 0 | 0 | 0 | |
get_classes-ConsensusPartition-method | 0.11 | 0.05 | 0.15 | |
get_classes-ConsensusPartitionList-method | 0.14 | 0.02 | 0.16 | |
get_classes-DownSamplingConsensusPartition-method | 0.05 | 0.01 | 0.06 | |
get_classes-HierarchicalPartition-method | 0.14 | 0.00 | 0.14 | |
get_classes-dispatch | 0 | 0 | 0 | |
get_consensus-ConsensusPartition-method | 0.18 | 0.03 | 0.22 | |
get_matrix-ConsensusPartition-method | 0.44 | 0.25 | 0.69 | |
get_matrix-ConsensusPartitionList-method | 0.33 | 0.33 | 0.65 | |
get_matrix-HierarchicalPartition-method | 0 | 0 | 0 | |
get_matrix-dispatch | 0 | 0 | 0 | |
get_membership-ConsensusPartition-method | 0.11 | 0.05 | 0.16 | |
get_membership-ConsensusPartitionList-method | 0.12 | 0.00 | 0.13 | |
get_membership-dispatch | 0 | 0 | 0 | |
get_param-ConsensusPartition-method | 0.11 | 0.01 | 0.13 | |
get_signatures-ConsensusPartition-method | 4.27 | 0.28 | 4.65 | |
get_signatures-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
get_signatures-HierarchicalPartition-method | 0 | 0 | 0 | |
get_signatures-dispatch | 0 | 0 | 0 | |
get_stats-ConsensusPartition-method | 0.20 | 0.02 | 0.22 | |
get_stats-ConsensusPartitionList-method | 0.19 | 0.00 | 0.19 | |
get_stats-dispatch | 0 | 0 | 0 | |
golub_cola | 0.18 | 0.02 | 0.20 | |
golub_cola_ds | 0.1 | 0.0 | 0.1 | |
golub_cola_rh | 0.12 | 0.00 | 0.12 | |
hierarchical_partition | 0 | 0 | 0 | |
is_best_k-ConsensusPartition-method | 0.11 | 0.03 | 0.14 | |
is_best_k-ConsensusPartitionList-method | 0.16 | 0.00 | 0.16 | |
is_best_k-dispatch | 0 | 0 | 0 | |
is_leaf_node-HierarchicalPartition-method | 0.09 | 0.00 | 0.09 | |
is_stable_k-ConsensusPartition-method | 0.13 | 0.01 | 0.14 | |
is_stable_k-ConsensusPartitionList-method | 0.07 | 0.05 | 0.13 | |
is_stable_k-dispatch | 0 | 0 | 0 | |
knee_finder2 | 0.02 | 0.02 | 0.03 | |
knitr_add_tab_item | 0 | 0 | 0 | |
knitr_insert_tabs | 0 | 0 | 0 | |
map_to_entrez_id | 0 | 0 | 0 | |
max_depth-HierarchicalPartition-method | 0.08 | 0.03 | 0.11 | |
membership_heatmap-ConsensusPartition-method | 0.33 | 0.06 | 0.39 | |
merge_node-HierarchicalPartition-method | 0 | 0 | 0 | |
merge_node_param | 0 | 0 | 0 | |
ncol-ConsensusPartition-method | 0 | 0 | 0 | |
ncol-ConsensusPartitionList-method | 0 | 0 | 0 | |
ncol-DownSamplingConsensusPartition-method | 0 | 0 | 0 | |
ncol-HierarchicalPartition-method | 0 | 0 | 0 | |
ncol-dispatch | 0 | 0 | 0 | |
node_info-HierarchicalPartition-method | 0 | 0 | 0 | |
node_level-HierarchicalPartition-method | 0 | 0 | 0 | |
nrow-ConsensusPartition-method | 0 | 0 | 0 | |
nrow-ConsensusPartitionList-method | 0 | 0 | 0 | |
nrow-HierarchicalPartition-method | 0 | 0 | 0 | |
nrow-dispatch | 0 | 0 | 0 | |
plot_ecdf-ConsensusPartition-method | 0.12 | 0.03 | 0.15 | |
predict_classes-ConsensusPartition-method | 0 | 0 | 0 | |
predict_classes-dispatch | 0 | 0 | 0 | |
predict_classes-matrix-method | 0 | 0 | 0 | |
print.hc_table_suggest_best_k | 0 | 0 | 0 | |
recalc_stats | 0 | 0 | 0 | |
register_NMF | 0 | 0 | 0 | |
register_SOM | 0 | 0 | 0 | |
register_partition_methods | 0.54 | 0.00 | 0.55 | |
register_top_value_methods | 0 | 0 | 0 | |
relabel_class | 0 | 0 | 0 | |
remove_partition_methods | 0 | 0 | 0 | |
remove_top_value_methods | 0 | 0 | 0 | |
rownames-ConsensusPartition-method | 0 | 0 | 0 | |
rownames-ConsensusPartitionList-method | 0 | 0 | 0 | |
rownames-HierarchicalPartition-method | 0 | 0 | 0 | |
rownames-dispatch | 0 | 0 | 0 | |
run_all_consensus_partition_methods | 0 | 0 | 0 | |
select_partition_number-ConsensusPartition-method | 0.12 | 0.02 | 0.14 | |
show-ConsensusPartition-method | 0 | 0 | 0 | |
show-ConsensusPartitionList-method | 0 | 0 | 0 | |
show-DownSamplingConsensusPartition-method | 0.08 | 0.00 | 0.08 | |
show-HierarchicalPartition-method | 0.13 | 0.00 | 0.13 | |
show-dispatch | 0 | 0 | 0 | |
split_node-HierarchicalPartition-method | 0 | 0 | 0 | |
suggest_best_k-ConsensusPartition-method | 0.11 | 0.01 | 0.12 | |
suggest_best_k-ConsensusPartitionList-method | 0.12 | 0.02 | 0.14 | |
suggest_best_k-HierarchicalPartition-method | 0.13 | 0.00 | 0.13 | |
suggest_best_k-dispatch | 0 | 0 | 0 | |
test_between_factors | 0 | 0 | 0 | |
test_to_known_factors-ConsensusPartition-method | 0.17 | 0.02 | 0.19 | |
test_to_known_factors-ConsensusPartitionList-method | 0.28 | 0.05 | 0.33 | |
test_to_known_factors-DownSamplingConsensusPartition-method | 0.13 | 0.00 | 0.12 | |
test_to_known_factors-HierarchicalPartition-method | 0.12 | 0.03 | 0.16 | |
test_to_known_factors-dispatch | 0 | 0 | 0 | |
top_elements_overlap | 0.25 | 0.00 | 0.25 | |
top_rows_heatmap-ConsensusPartition-method | 0 | 0 | 0 | |
top_rows_heatmap-ConsensusPartitionList-method | 0 | 0 | 0 | |
top_rows_heatmap-HierarchicalPartition-method | 0 | 0 | 0 | |
top_rows_heatmap-dispatch | 0 | 0 | 0 | |
top_rows_heatmap-matrix-method | 2.21 | 0.57 | 2.88 | |
top_rows_overlap-ConsensusPartitionList-method | 0.61 | 0.10 | 0.70 | |
top_rows_overlap-HierarchicalPartition-method | 0.49 | 0.00 | 0.49 | |
top_rows_overlap-dispatch | 0 | 0 | 0 | |
top_rows_overlap-matrix-method | 0.12 | 0.00 | 0.12 | |