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### Running command:
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### chmod a+r coMethDMR -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data coMethDMR
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* checking for file 'coMethDMR/DESCRIPTION' ... OK
* preparing 'coMethDMR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd' using rmarkdown
Loading required package: sesameData
Loading required package: ExperimentHub
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: AnnotationHub
Loading required package: BiocFileCache
Loading required package: dbplyr
Loading sesameData.
Checking for cached SeSAMe data.
snapshotDate(): 2022-03-16
Quitting from lines 105-120 (vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd)
Error: processing vignette 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd' failed with diagnostics:
BiocParallel errors
1 remote errors, element index: 1
19 unevaluated and other errors
first remote error:
Error in .sesameDataGet(title, use_alternative = use_alternative): Data HM450.hg19.manifest not found.
--- failed re-building 'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd'
--- re-building 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd' using rmarkdown
Checking for cached SeSAMe data.
snapshotDate(): 2022-03-16
Checking for cached SeSAMe data.
snapshotDate(): 2022-03-16
Checking for cached SeSAMe data.
Checking for cached SeSAMe data.
snapshotDate(): 2022-03-16
snapshotDate(): 2022-03-16
Quitting from lines 135-147 (vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd)
Timing stopped at: 0.6 0 10.2
Error: processing vignette 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd' failed with diagnostics:
BiocParallel errors
2 remote errors, element index: 1, 6
8 unevaluated and other errors
first remote error:
Error in .sesameDataGet(title, use_alternative = use_alternative): Data HM450.hg19.manifest not found.
--- failed re-building 'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd'
SUMMARY: processing the following files failed:
'vin1_Introduction_to_coMethDMR_geneBasedPipeline.Rmd'
'vin2_BiocParallel_for_coMethDMR_geneBasedPipeline.Rmd'
Error: Vignette re-building failed.
Execution halted