Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-03-18 11:07:07 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for cbpManager on riesling1


To the developers/maintainers of the cbpManager package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cbpManager.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 253/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cbpManager 1.3.2  (landing page)
Arsenij Ustjanzew
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/cbpManager
git_branch: master
git_last_commit: 388d6df
git_last_commit_date: 2021-12-16 16:25:35 -0400 (Thu, 16 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: cbpManager
Version: 1.3.2
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cbpManager
StartedAt: 2022-03-17 16:15:33 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 16:17:20 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 106.3 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL cbpManager
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'cbpManager' ...
** using non-staged installation via StagedInstall field
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cbpManager'
    finding HTML links ... done
    IsDate                                  html  
    ValidationDependencies                  html  
    addColumn_Server                        html  
    addColumn_UI                            html  
    addRowRc_Server                         html  
    addRowRc_UI                             html  
    addRow_Server                           html  
    addRow_UI                               html  
    cBioPortalToDataFrame                   html  
    cbpManager-pkg                          html  
    cbpManager                              html  
    check_input_dates                       html  
    convertDataFrame                        html  
    create_name                             html  
    deleteColumn_Server                     html  
    deleteColumn_UI                         html  
    deleteRowRc_Server                      html  
    deleteRowRc_UI                          html  
    deleteRow_Server                        html  
    deleteRow_UI                            html  
    editRowRc_Server                        html  
    editRowRc_UI                            html  
    editRow_Server                          html  
    editRow_UI                              html  
    fncols                                  html  
    generateOncotreeUIwidgets               html  
    generateUIwidgets                       html  
    getSampleIDs                            html  
    importPatientData                       html  
    saveResource_Server                     html  
    saveResource_UI                         html  
    saveTimeline_Server                     html  
    saveTimeline_UI                         html  
    setupConda_cbpManager                   html  
    shinyAppServer                          html  
    shinyAppUI                              html  
    updateOncotreeUIwidgets                 html  
    validateResourceDefinition              html  
    validateResourcePatient                 html  
    validateResourceSample                  html  
    validateResourceStudy                   html  
    writeLogfile                            html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (cbpManager)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'iCheck' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'tripr' is missing or broken
 done