George Weingart
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/banocc |
| git_branch: RELEASE_3_15 |
| git_last_commit: 5dc8a82 |
| git_last_commit_date: 2022-04-26 11:40:10 -0400 (Tue, 26 Apr 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:21:07 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the banocc package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/banocc.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 113/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| banocc 1.20.0 (landing page) George Weingart
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: banocc |
| Version: 1.20.0 |
| Command: chmod a+r banocc -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data banocc |
| StartedAt: 2022-10-18 17:11:58 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 17:13:13 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 75.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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###
### Running command:
###
### chmod a+r banocc -R && F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data banocc
###
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* checking for file 'banocc/DESCRIPTION' ... OK
* preparing 'banocc':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'banocc-vignette.Rmd' using rmarkdown
DIAGNOSTIC(S) FROM PARSER:
Info: integer division implicitly rounds to integer. Found int division: P * P - 1 / 2
Positive values rounded down, negative values rounded up or down in platform-dependent way.
make cmd is
make -f "F:/biocbuild/bbs-3.15-bioc/R/etc/x64/Makeconf" -f "F:/biocbuild/bbs-3.15-bioc/R/share/make/winshlib.mk" CXX='$(CXX14) $(CXX14STD)' CXXFLAGS='$(CXX14FLAGS)' CXXPICFLAGS='$(CXX14PICFLAGS)' SHLIB_LDFLAGS='$(SHLIB_CXX14LDFLAGS)' SHLIB_LD='$(SHLIB_CXX14LD)' SHLIB="file2f004c064d0.dll" WIN=64 TCLBIN= OBJECTS="file2f004c064d0.o"
make would use
if test "zfile2f004c064d0.o" != "z"; then \
if test -e "file2f004c064d0-win.def"; then \
echo g++ -shared -s -static-libgcc -o file2f004c064d0.dll file2f004c064d0-win.def file2f004c064d0.o -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64" -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib" -L"F:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file2f004c064d0.dll file2f004c064d0-win.def file2f004c064d0.o -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64" -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib" -L"F:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
else \
echo EXPORTS > tmp.def; \
nm file2f004c064d0.o | sed -n 's/^.* [BCDRT] / /p' | sed -e '/[.]refptr[.]/d' -e '/[.]weak[.]/d' | sed 's/[^ ][^ ]*/"&"/g' >> tmp.def; \
echo g++ -shared -s -static-libgcc -o file2f004c064d0.dll tmp.def file2f004c064d0.o -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64" -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib" -L"F:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
g++ -shared -s -static-libgcc -o file2f004c064d0.dll tmp.def file2f004c064d0.o -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64" -L"C:/rtools42/x86_64-w64-mingw32.static.posix/lib" -L"F:/biocbuild/bbs-3.15-bioc/R/bin/x64" -lR ; \
rm -f tmp.def; \
fi \
fi
Quitting from lines 138-142 (banocc-vignette.Rmd)
Quitting from lines 138-142 (banocc-vignette.Rmd)
Error: processing vignette 'banocc-vignette.Rmd' failed with diagnostics:
invalid connection
--- failed re-building 'banocc-vignette.Rmd'
SUMMARY: processing the following file failed:
'banocc-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted