Multiple platform build/check report for BioC 3.15 - BUILD BIN results for bambu on riesling1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 20.04.4 LTS)	x86_64	R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"	4334
riesling1	Windows Server 2019 Standard	x64	R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"	4097
palomino3	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences"	4083
merida1	macOS 10.14.6 Mojave	x86_64	R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences"	4134
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Hostname

Arch (*)

R version

Installed pkgs

nebbiolo1

Linux (Ubuntu 20.04.4 LTS)

x86_64

R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences"

4334

riesling1

Windows Server 2019 Standard

x64

R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences"

4097

palomino3

Windows Server 2022 Datacenter

x64

R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences"

4083

merida1

macOS 10.14.6 Mojave

x86_64

R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences"

4134

Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for bambu on riesling1

To the developers/maintainers of the bambu package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bambu.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

bambu 2.1.6 (landing page)
Ying Chen

Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)

git_url: https://git.bioconductor.org/packages/bambu

git_branch: master

git_last_commit: 4eec700

git_last_commit_date: 2022-02-23 00:02:59 -0400 (Wed, 23 Feb 2022)

nebbiolo1

Linux (Ubuntu 20.04.4 LTS) / x86_64

riesling1

Windows Server 2019 Standard / x64

palomino3

Windows Server 2022 Datacenter / x64

merida1

macOS 10.14.6 Mojave / x86_64

Summary

Package: bambu

Version: 2.1.6

Command: rm -rf bambu.buildbin-libdir && mkdir bambu.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=bambu.buildbin-libdir bambu_2.1.6.tar.gz

StartedAt: 2022-03-17 20:53:49 -0400 (Thu, 17 Mar 2022)

EndedAt: 2022-03-17 20:55:15 -0400 (Thu, 17 Mar 2022)

EllapsedTime: 85.8 seconds

RetCode: 0

Status: OK

PackageFile: bambu_2.1.6.zip

PackageFileSize: 3.113 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf bambu.buildbin-libdir && mkdir bambu.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=bambu.buildbin-libdir bambu_2.1.6.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'bambu' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/RcppArmadillo/include'   -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c em.cpp -o em.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o bambu.dll tmp.def RcppExports.o em.o -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRlapack -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/bambu.buildbin-libdir/00LOCK-bambu/00new/bambu/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'bambu'
    finding HTML links ... done
    bambu                                   html  
    plotBambu                               html  
    prepareAnnotations                      html  
    readFromGTF                             html  
    transcriptToGeneExpression              html  
    writeBambuOutput                        html  
    finding level-2 HTML links ... done

    writeToGTF                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'bambu' as bambu_2.1.6.zip
* DONE (bambu)