| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:19:56 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the a4Base package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/a4Base.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| a4Base 1.44.0 (landing page) Laure Cougnaud
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: a4Base |
| Version: 1.44.0 |
| Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings a4Base_1.44.0.tar.gz |
| StartedAt: 2022-10-18 18:30:29 -0400 (Tue, 18 Oct 2022) |
| EndedAt: 2022-10-18 18:33:32 -0400 (Tue, 18 Oct 2022) |
| EllapsedTime: 183.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: a4Base.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:a4Base.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings a4Base_1.44.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/a4Base.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘a4Base/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘a4Base’ version ‘1.44.0’
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: ‘JavaGD’
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘a4Base’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
spectralMap 11.437 0.413 11.852
computeLogRatio 4.751 0.251 5.002
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.15-bioc/meat/a4Base.Rcheck/00check.log’
for details.
a4Base.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL a4Base ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘a4Base’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (a4Base)
a4Base.Rcheck/a4Base-Ex.timings
| name | user | system | elapsed | |
| a4palette | 0.021 | 0.004 | 0.025 | |
| addQuantilesColors | 1.916 | 0.257 | 2.173 | |
| boxPlot | 2.529 | 0.111 | 2.642 | |
| combineTwoExpressionSet | 0 | 0 | 0 | |
| computeLogRatio | 4.751 | 0.251 | 5.002 | |
| createExpressionSet | 0.03 | 0.00 | 0.03 | |
| filterVarInt | 1.705 | 0.051 | 1.757 | |
| heatmap.expressionSet | 0.000 | 0.002 | 0.003 | |
| histPvalue | 2.403 | 0.157 | 2.560 | |
| histpvalueplotter | 1.734 | 0.045 | 1.778 | |
| lassoReg | 1.793 | 0.067 | 1.861 | |
| logReg | 0.000 | 0.000 | 0.001 | |
| nlcvTT | 0.000 | 0.000 | 0.001 | |
| plot1gene | 1.677 | 0.051 | 1.730 | |
| plotComb2Samples | 1.891 | 0.052 | 1.942 | |
| plotCombMultSamples | 2.780 | 0.051 | 2.832 | |
| plotCombination2genes | 2.575 | 0.076 | 2.651 | |
| plotLogRatio | 4.804 | 0.131 | 4.936 | |
| probabilitiesPlot | 0 | 0 | 0 | |
| probe2gene | 1.467 | 0.059 | 1.526 | |
| profilesPlot | 1.767 | 0.076 | 1.843 | |
| propdegenescalculation | 1.857 | 0.028 | 1.885 | |
| replicates | 0.000 | 0.001 | 0.001 | |
| spectralMap | 11.437 | 0.413 | 11.852 | |
| tTest | 2.156 | 0.072 | 2.228 | |
| volcanoPlot | 2.182 | 0.039 | 2.223 | |