| Back to Multiple platform build/check report for BioC 3.15 | 
 | 
This page was generated on 2022-03-18 11:08:43 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 | 
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 | 
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 | 
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| To the developers/maintainers of the SingleCellSignalR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SingleCellSignalR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. | 
| Package 1814/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SingleCellSignalR 1.7.0  (landing page) Jacques Colinge 
 | nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | WARNINGS |  | ||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK |  | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |  | ||||||||
| Package: SingleCellSignalR | 
| Version: 1.7.0 | 
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SingleCellSignalR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings SingleCellSignalR_1.7.0.tar.gz | 
| StartedAt: 2022-03-17 20:18:45 -0400 (Thu, 17 Mar 2022) | 
| EndedAt: 2022-03-17 20:22:02 -0400 (Thu, 17 Mar 2022) | 
| EllapsedTime: 197.4 seconds | 
| RetCode: 0 | 
| Status: WARNINGS | 
| CheckDir: SingleCellSignalR.Rcheck | 
| Warnings: 1 | 
##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:SingleCellSignalR.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings SingleCellSignalR_1.7.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/SingleCellSignalR.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SingleCellSignalR/DESCRIPTION' ... OK
* this is package 'SingleCellSignalR' version '1.7.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SingleCellSignalR' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.3Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
  LazyData DB of 5.9 MB without LazyDataCompression set
  See ยง1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 1 NOTE
See
  'D:/biocbuild/bbs-3.15-bioc/meat/SingleCellSignalR.Rcheck/00check.log'
for details.
SingleCellSignalR.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL SingleCellSignalR
###
##############################################################################
##############################################################################
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'SingleCellSignalR' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'SingleCellSignalR'
    finding HTML links ... done
    LRdb                                    html  
    LRscore                                 html  
    PwC_ReactomeKEGG                        html  
    cell_classifier                         html  
    cell_signaling                          html  
    cluster_analysis                        html  
    clustering                              html  
    data_prepare                            html  
    example_dataset                         html  
    expression_plot                         html  
    expression_plot_2                       html  
    inter_network                           html  
    intra_network                           html  
    markers                                 html  
    markers_default                         html  
    mm2Hs                                   html  
    mv_interactions                         html  
    simplify_interactions                   html  
    visualize_interactions                  html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (SingleCellSignalR)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'MCbiclust' is missing or broken
 done
SingleCellSignalR.Rcheck/SingleCellSignalR-Ex.timings
| name | user | system | elapsed | |
| LRscore | 0 | 0 | 0 | |
| cell_classifier | 0.08 | 0.00 | 0.08 | |
| cell_signaling | 0.01 | 0.02 | 0.03 | |
| cluster_analysis | 0 | 0 | 0 | |
| clustering | 0.58 | 0.00 | 0.58 | |
| data_prepare | 0.02 | 0.00 | 0.01 | |
| expression_plot | 0.00 | 0.01 | 0.02 | |
| expression_plot_2 | 0 | 0 | 0 | |
| inter_network | 0 | 0 | 0 | |
| intra_network | 3.93 | 0.43 | 4.36 | |
| markers | 0.00 | 0.01 | 0.01 | |
| mv_interactions | 0 | 0 | 0 | |
| simplify_interactions | 0 | 0 | 0 | |
| visualize_interactions | 0.19 | 0.02 | 0.21 | |