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###
### Running command:
###
###   rm -rf Rmmquant.buildbin-libdir && mkdir Rmmquant.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh Rmmquant_1.14.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R Rmmquant.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=Rmmquant.buildbin-libdir Rmmquant_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘Rmmquant’ ...
** using staged installation
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include   -fPIC  -Wall -g -O2  -c mmquant_wrapper.cpp -o mmquant_wrapper.o
In file included from mmquant_wrapper.cpp:5:
./mmquant.h:125:60: warning: 'ptr_fun<int, int>' is deprecated [-Wdeprecated-declarations]
  s.erase(s.begin(), find_if(s.begin(), s.end(), not1(std::ptr_fun<int, int>(isspace))));
                                                           ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/functional:1097:1: note: 'ptr_fun<int, int>' has been explicitly marked deprecated here
_LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from mmquant_wrapper.cpp:5:
./mmquant.h:129:51: warning: 'ptr_fun<int, int>' is deprecated [-Wdeprecated-declarations]
  s.erase(find_if(s.rbegin(), s.rend(), not1(std::ptr_fun<int, int>(isspace))).base(), s.end());
                                                  ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/functional:1097:1: note: 'ptr_fun<int, int>' has been explicitly marked deprecated here
_LIBCPP_DEPRECATED_IN_CXX11 inline _LIBCPP_INLINE_VISIBILITY
^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1101:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX11'
#  define _LIBCPP_DEPRECATED_IN_CXX11 _LIBCPP_DEPRECATED
                                      ^
/Library/Developer/CommandLineTools/usr/bin/../include/c++/v1/__config:1090:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
2 warnings generated.
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o Rmmquant.so RcppExports.o mmquant_wrapper.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.15-bioc/meat/Rmmquant.buildbin-libdir/00LOCK-Rmmquant/00new/Rmmquant/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rmmquant)


>>>>>>> 
>>>>>>> FIXING LINKS FOR Rmmquant.buildbin-libdir/Rmmquant/libs/Rmmquant.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "Rmmquant.buildbin-libdir/Rmmquant/libs/Rmmquant.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "Rmmquant.buildbin-libdir/Rmmquant/libs/Rmmquant.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "Rmmquant.buildbin-libdir/Rmmquant/libs/Rmmquant.so"