| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-03-18 11:08:26 -0400 (Fri, 18 Mar 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" | 4334 |
| riesling1 | Windows Server 2019 Standard | x64 | R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" | 4097 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" | 4083 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" | 4134 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ReactomeContentService4R package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ReactomeContentService4R.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1564/2090 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ReactomeContentService4R 1.3.0 (landing page) Chi-Lam Poon
| nebbiolo1 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | |||||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: ReactomeContentService4R |
| Version: 1.3.0 |
| Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ReactomeContentService4R.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings ReactomeContentService4R_1.3.0.tar.gz |
| StartedAt: 2022-03-17 20:01:44 -0400 (Thu, 17 Mar 2022) |
| EndedAt: 2022-03-17 20:02:33 -0400 (Thu, 17 Mar 2022) |
| EllapsedTime: 48.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ReactomeContentService4R.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:ReactomeContentService4R.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings ReactomeContentService4R_1.3.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/ReactomeContentService4R.Rcheck' * using R Under development (unstable) (2021-11-21 r81221) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'ReactomeContentService4R/DESCRIPTION' ... OK * this is package 'ReactomeContentService4R' version '1.3.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'ReactomeContentService4R' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
ReactomeContentService4R.Rcheck/00install.out
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### Running command:
###
### D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL ReactomeContentService4R
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'ReactomeContentService4R' ...
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ReactomeContentService4R'
finding HTML links ... done
ReactomeContentService4R-package html
discover html
exportEventFile html
exportImage html
finding level-2 HTML links ... done
getEntities html
getEventsHierarchy html
getOrthology html
getParticipants html
getPathways html
getPerson html
getSchemaClass html
getSpecies html
listSearchItems html
mapId html
query html
searchQuery html
spellCheck html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ReactomeContentService4R)
Making 'packages.html' ... done
ReactomeContentService4R.Rcheck/ReactomeContentService4R-Ex.timings
| name | user | system | elapsed | |
| discover | 0.04 | 0.00 | 0.11 | |
| exportEventFile | 0.00 | 0.00 | 0.07 | |
| exportImage | 0.03 | 0.02 | 1.03 | |
| getEntities | 0.06 | 0.03 | 1.83 | |
| getEventsHierarchy | 0 | 0 | 0 | |
| getOrthology | 0.04 | 0.00 | 1.30 | |
| getParticipants | 0.04 | 0.00 | 0.28 | |
| getPathways | 0.03 | 0.00 | 0.65 | |
| getPerson | 0.02 | 0.00 | 2.14 | |
| getSchemaClass | 0.05 | 0.02 | 4.61 | |
| getSpecies | 0.03 | 0.00 | 0.74 | |
| listSearchItems | 0.04 | 0.00 | 0.14 | |
| mapId | 0.10 | 0.01 | 1.59 | |
| query | 0.01 | 0.00 | 0.06 | |
| searchQuery | 0.00 | 0.00 | 0.68 | |
| spellCheck | 0.00 | 0.00 | 0.04 | |