Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:39 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the RUVcorr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RUVcorr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1727/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RUVcorr 1.28.0 (landing page) Saskia Freytag
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | WARNINGS | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | |||||||||
Package: RUVcorr |
Version: 1.28.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RUVcorr_1.28.0.tar.gz |
StartedAt: 2022-10-19 07:27:07 -0400 (Wed, 19 Oct 2022) |
EndedAt: 2022-10-19 07:28:20 -0400 (Wed, 19 Oct 2022) |
EllapsedTime: 72.6 seconds |
RetCode: 0 |
Status: WARNINGS |
CheckDir: RUVcorr.Rcheck |
Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:RUVcorr.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings RUVcorr_1.28.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/RUVcorr.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RUVcorr/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RUVcorr’ version ‘1.28.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RUVcorr’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... WARNING Warning: S4 exports specified in 'NAMESPACE' but not defined in package ‘RUVcorr’ * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING See ‘/Users/biocbuild/bbs-3.15-bioc/meat/RUVcorr.Rcheck/00check.log’ for details.
RUVcorr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL RUVcorr ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘RUVcorr’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RUVcorr)
RUVcorr.Rcheck/RUVcorr-Ex.timings
name | user | system | elapsed | |
ECDFPlot | 0.829 | 0.040 | 0.870 | |
PCAPlot | 2.313 | 0.049 | 2.372 | |
RLEPlot | 2.656 | 0.093 | 2.769 | |
RUVNaiveRidge | 0.607 | 0.016 | 0.623 | |
assessQuality | 0.101 | 0.010 | 0.110 | |
background | 0.090 | 0.007 | 0.096 | |
calculateThreshold | 2.067 | 0.072 | 2.143 | |
compareRanks | 0.962 | 0.016 | 0.979 | |
correlationPlot | 0.135 | 0.009 | 0.145 | |
eigenvaluePlot | 0.322 | 0.017 | 0.339 | |
empNegativeControls | 0.233 | 0.006 | 0.240 | |
findWeights | 0.365 | 0.020 | 0.385 | |
genePlot | 0.296 | 0.011 | 0.307 | |
histogramPlot | 0.392 | 0.005 | 0.398 | |
is.optimizeParameters | 0.000 | 0.001 | 0.000 | |
is.simulateGEdata | 0 | 0 | 0 | |
optimizeParameters | 1.813 | 0.028 | 1.843 | |
plot.optimizeParameters | 2.309 | 0.041 | 2.352 | |
plotDesign | 0.849 | 0.030 | 0.879 | |
plotThreshold | 2.040 | 0.041 | 2.082 | |
print.simulateGEdata | 0.001 | 0.000 | 0.000 | |
prioritise | 0.402 | 0.010 | 0.411 | |
simulateGEdata | 0.426 | 0.017 | 0.444 | |
wcor | 0.491 | 0.015 | 0.506 | |