Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:20:45 -0400 (Wed, 19 Oct 2022).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the RCSL package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RCSL.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1591/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
RCSL 1.4.0 (landing page) Qinglin Mei
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
Package: RCSL |
Version: 1.4.0 |
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:RCSL.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings RCSL_1.4.0.tar.gz |
StartedAt: 2022-10-18 21:23:05 -0400 (Tue, 18 Oct 2022) |
EndedAt: 2022-10-18 21:29:40 -0400 (Tue, 18 Oct 2022) |
EllapsedTime: 395.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RCSL.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD check --install=check:RCSL.install-out.txt --library=/home/biocbuild/bbs-3.15-bioc/R/library --no-vignettes --timings RCSL_1.4.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.15-bioc/meat/RCSL.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RCSL/DESCRIPTION’ ... OK * this is package ‘RCSL’ version ‘1.4.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RCSL’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE Package listed in more than one of Depends, Imports, Suggests, Enhances: ‘RcppAnnoy’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE PlotMST: no visible binding for global variable ‘X1’ PlotMST: no visible binding for global variable ‘X2’ PlotMST: no visible binding for global variable ‘label’ PlotMST: no visible binding for global variable ‘from.x’ PlotMST: no visible binding for global variable ‘to.x’ PlotMST: no visible binding for global variable ‘from.y’ PlotMST: no visible binding for global variable ‘to.y’ PlotMST: no visible binding for global variable ‘V1’ PlotMST: no visible binding for global variable ‘V2’ PlotPseudoTime: no visible binding for global variable ‘x’ PlotPseudoTime: no visible binding for global variable ‘y’ PlotPseudoTime: no visible binding for global variable ‘Timepoint’ PlotTrajectory: no visible binding for global variable ‘X1’ PlotTrajectory: no visible binding for global variable ‘X2’ PlotTrajectory: no visible binding for global variable ‘label’ PlotTrajectory: no visible binding for global variable ‘x’ PlotTrajectory: no visible binding for global variable ‘y’ Undefined global functions or variables: Timepoint V1 V2 X1 X2 from.x from.y label to.x to.y x y * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed PlotMST 37.681 0.040 37.723 EstClusters 34.915 0.112 35.029 NeigRepresent 34.829 0.184 35.013 BDSM 34.013 0.295 34.310 GenesFilter 32.882 1.004 33.885 TrajectoryAnalysis 33.173 0.052 33.226 PlotTrajectory 32.755 0.080 32.836 PlotPseudoTime 32.464 0.136 32.602 getLineage 32.406 0.096 32.503 SimS 32.014 0.268 32.283 RCSL 8.054 0.948 9.003 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.15-bioc/meat/RCSL.Rcheck/00check.log’ for details.
RCSL.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD INSTALL RCSL ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-bioc/R/library’ * installing *source* package ‘RCSL’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RCSL)
RCSL.Rcheck/RCSL-Ex.timings
name | user | system | elapsed | |
BDSM | 34.013 | 0.295 | 34.310 | |
EstClusters | 34.915 | 0.112 | 35.029 | |
GenesFilter | 32.882 | 1.004 | 33.885 | |
NeigRepresent | 34.829 | 0.184 | 35.013 | |
PlotMST | 37.681 | 0.040 | 37.723 | |
PlotPseudoTime | 32.464 | 0.136 | 32.602 | |
PlotTrajectory | 32.755 | 0.080 | 32.836 | |
RCSL | 8.054 | 0.948 | 9.003 | |
SimS | 32.014 | 0.268 | 32.283 | |
TrajectoryAnalysis | 33.173 | 0.052 | 33.226 | |
getLineage | 32.406 | 0.096 | 32.503 | |