Denes Turei
| Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022) |
| git_url: https://git.bioconductor.org/packages/OmnipathR |
| git_branch: RELEASE_3_15 |
| git_last_commit: fd6742c |
| git_last_commit_date: 2022-10-15 12:41:33 -0400 (Sat, 15 Oct 2022) |
| Back to Multiple platform build/check report for BioC 3.15 |
|
This page was generated on 2022-10-19 13:23:24 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the OmnipathR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1366/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.4.7 (landing page) Denes Turei
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | TIMEOUT | OK | |||||||||
| Package: OmnipathR |
| Version: 3.4.7 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OmnipathR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OmnipathR_3.4.7.tar.gz |
| StartedAt: 2022-10-19 05:41:47 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 06:21:48 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 2400.8 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: OmnipathR.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:OmnipathR.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings OmnipathR_3.4.7.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/OmnipathR.Rcheck’
* using R version 4.2.1 (2022-06-23)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmnipathR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘OmnipathR’ version ‘3.4.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmnipathR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
‘rmarkdown’
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
[2022-10-19 05:42:31] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2022-10-19 05:42:31] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-10-19 05:42:31] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2022-10-19 05:42:32] [TRACE] [OmnipathR] Pandoc version: `2.7.3`.
[2022-10-19 05:42:32] [TRACE] [OmnipathR] Cache locked: FALSE
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
nichenet_lr_network 301.704 2.273 309.849
nichenet_networks 128.502 1.469 133.645
filter_intercell_network 103.226 1.236 140.695
simplify_intercell_network 99.695 0.726 105.774
evex_download 95.155 1.391 114.866
unique_intercell_network 92.271 0.418 92.784
nichenet_gr_network_evex 87.728 1.016 88.469
nichenet_lr_network_omnipath 74.516 0.912 84.628
nichenet_signaling_network 66.513 2.758 73.182
annotation_categories 47.407 0.151 50.827
bioplex_all 43.199 1.504 46.481
curated_ligrec_stats 38.826 1.531 130.088
consensuspathdb_raw_table 34.060 1.932 38.476
pivot_annotations 21.115 1.559 26.596
go_annot_download 19.649 1.534 19.073
filter_extra_attrs 19.730 0.134 24.602
extra_attr_values 16.056 0.277 30.365
ancestors 14.217 1.197 16.287
nichenet_gr_network_pathwaycommons 13.429 0.867 14.932
nichenet_signaling_network_evex 13.356 0.656 13.369
preppi_download 11.783 1.939 22.095
hpo_download 12.742 0.794 14.273
nichenet_gr_network_omnipath 11.562 0.980 14.062
pathwaycommons_download 11.549 0.787 13.060
preppi_filter 10.838 1.167 7.669
with_extra_attrs 11.335 0.200 13.629
nichenet_signaling_network_omnipath 11.082 0.379 11.499
extra_attrs_to_cols 10.723 0.084 10.822
filter_intercell 10.013 0.735 16.458
nichenet_gr_network 10.198 0.483 15.680
extra_attrs 10.032 0.126 15.851
curated_ligand_receptor_interactions 8.723 0.412 21.037
bioplex1 8.114 0.475 9.451
import_intercell_network 8.301 0.267 13.853
has_extra_attrs 8.289 0.025 8.321
giant_component 7.321 0.209 12.561
kegg_info 6.580 0.401 10.191
get_db 6.454 0.384 6.941
ramilowski_download 5.781 0.684 9.449
obo_parser 5.896 0.390 6.357
nichenet_gr_network_harmonizome 5.577 0.403 6.585
bioplex3 4.606 0.348 7.540
kegg_pathway_download 4.368 0.146 17.534
filter_by_resource 4.178 0.168 6.409
print_interactions 3.897 0.212 8.399
guide2pharma_download 3.542 0.220 6.140
htridb_download 3.389 0.186 5.843
pubmed_open 3.239 0.183 5.442
nichenet_gr_network_trrust 3.067 0.071 6.755
print_path_vs 2.695 0.080 5.866
enzsub_graph 2.554 0.096 6.167
all_uniprots 2.247 0.054 236.152
import_dorothea_interactions 2.193 0.103 6.152
import_transcriptional_interactions 2.172 0.096 6.112
uniprot_full_id_mapping_table 2.081 0.101 14.158
import_all_interactions 1.843 0.110 6.933
translate_ids 1.643 0.126 13.408
uniprot_id_mapping_table 0.702 0.017 6.099
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OmnipathR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL OmnipathR ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘OmnipathR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2022-10-18 15:58:59] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2022-10-18 15:58:59] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-10-18 15:58:59] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2022-10-18 15:58:59] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2022-10-18 15:59:00] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2022-10-18 15:59:02] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`. [2022-10-18 15:59:02] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2022-10-18 15:59:02] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`. [2022-10-18 15:59:02] [TRACE] [OmnipathR] Pandoc version: `2.7.3`. [2022-10-18 15:59:03] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)
OmnipathR.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> #!/usr/bin/env Rscript
>
> #
> # This file is part of the `OmnipathR` R package
> #
> # Copyright
> # 2018-2022
> # Saez Lab, Uniklinik RWTH Aachen, Heidelberg University
> #
> # File author(s): Alberto Valdeolivas
> # Dénes Türei (turei.denes@gmail.com)
> # Attila Gábor
> #
> # Distributed under the MIT (Expat) License.
> # See accompanying file `LICENSE` or find a copy at
> # https://directory.fsf.org/wiki/License:Expat
> #
> # Website: https://saezlab.github.io/omnipathr
> # Git repo: https://github.com/saezlab/OmnipathR
> #
>
>
> library(testthat)
> library(OmnipathR)
[2022-10-19 06:21:47] [INFO] [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2022-10-19 06:21:47] [TRACE] [OmnipathR] Running on a build server, wiping cache.
[2022-10-19 06:21:47] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2022-10-19 06:21:47] [TRACE] [OmnipathR] Pandoc version: `2.7.3`.
[2022-10-19 06:21:47] [TRACE] [OmnipathR] Cache locked: FALSE
>
> test_check('OmnipathR')
OmnipathR.Rcheck/OmnipathR-Ex.timings
| name | user | system | elapsed | |
| OmnipathR | 0.000 | 0.000 | 0.001 | |
| all_uniprots | 2.247 | 0.054 | 236.152 | |
| ancestors | 14.217 | 1.197 | 16.287 | |
| annotated_network | 1.012 | 0.080 | 4.533 | |
| annotation_categories | 47.407 | 0.151 | 50.827 | |
| bioplex1 | 8.114 | 0.475 | 9.451 | |
| bioplex2 | 3.038 | 0.165 | 4.306 | |
| bioplex3 | 4.606 | 0.348 | 7.540 | |
| bioplex_all | 43.199 | 1.504 | 46.481 | |
| bioplex_hct116_1 | 0.302 | 0.005 | 0.308 | |
| bma_motif_es | 0.497 | 0.044 | 1.879 | |
| bma_motif_vs | 0.239 | 0.006 | 0.875 | |
| consensuspathdb_download | 0.000 | 0.000 | 0.001 | |
| consensuspathdb_raw_table | 34.060 | 1.932 | 38.476 | |
| curated_ligand_receptor_interactions | 8.723 | 0.412 | 21.037 | |
| curated_ligrec_stats | 38.826 | 1.531 | 130.088 | |
| descendants | 1.312 | 0.008 | 2.479 | |
| enzsub_graph | 2.554 | 0.096 | 6.167 | |
| evex_download | 95.155 | 1.391 | 114.866 | |
| extra_attr_values | 16.056 | 0.277 | 30.365 | |
| extra_attrs | 10.032 | 0.126 | 15.851 | |
| extra_attrs_to_cols | 10.723 | 0.084 | 10.822 | |
| filter_by_resource | 4.178 | 0.168 | 6.409 | |
| filter_extra_attrs | 19.730 | 0.134 | 24.602 | |
| filter_intercell | 10.013 | 0.735 | 16.458 | |
| filter_intercell_network | 103.226 | 1.236 | 140.695 | |
| find_all_paths | 4.531 | 0.028 | 4.569 | |
| get_annotation_resources | 0.090 | 0.005 | 0.731 | |
| get_complex_genes | 1.907 | 0.084 | 4.001 | |
| get_complex_resources | 0.084 | 0.002 | 0.719 | |
| get_db | 6.454 | 0.384 | 6.941 | |
| get_enzsub_resources | 0.081 | 0.002 | 0.776 | |
| get_interaction_resources | 0.087 | 0.003 | 0.808 | |
| get_intercell_categories | 0.492 | 0.032 | 1.242 | |
| get_intercell_generic_categories | 0.053 | 0.002 | 0.056 | |
| get_intercell_resources | 0.094 | 0.002 | 0.778 | |
| get_ontology_db | 0.473 | 0.002 | 0.475 | |
| get_resources | 0.097 | 0.003 | 0.729 | |
| get_signed_ptms | 2.704 | 0.011 | 3.415 | |
| giant_component | 7.321 | 0.209 | 12.561 | |
| go_annot_download | 19.649 | 1.534 | 19.073 | |
| go_annot_slim | 0.000 | 0.000 | 0.001 | |
| go_ontology_download | 0.251 | 0.004 | 0.255 | |
| guide2pharma_download | 3.542 | 0.220 | 6.140 | |
| harmonizome_download | 0.756 | 0.030 | 0.972 | |
| has_extra_attrs | 8.289 | 0.025 | 8.321 | |
| hpo_download | 12.742 | 0.794 | 14.273 | |
| htridb_download | 3.389 | 0.186 | 5.843 | |
| import_all_interactions | 1.843 | 0.110 | 6.933 | |
| import_dorothea_interactions | 2.193 | 0.103 | 6.152 | |
| import_intercell_network | 8.301 | 0.267 | 13.853 | |
| import_kinaseextra_interactions | 1.564 | 0.101 | 4.993 | |
| import_ligrecextra_interactions | 0.960 | 0.069 | 3.223 | |
| import_lncrna_mrna_interactions | 0.784 | 0.050 | 2.307 | |
| import_mirnatarget_interactions | 1.179 | 0.066 | 3.360 | |
| import_omnipath_annotations | 0.704 | 0.031 | 2.133 | |
| import_omnipath_complexes | 0.949 | 0.041 | 3.065 | |
| import_omnipath_enzsub | 0.970 | 0.006 | 1.612 | |
| import_omnipath_interactions | 0.235 | 0.004 | 0.907 | |
| import_omnipath_intercell | 0.885 | 0.052 | 2.032 | |
| import_pathwayextra_interactions | 0.960 | 0.068 | 3.454 | |
| import_post_translational_interactions | 1.131 | 0.075 | 3.643 | |
| import_small_molecule_protein_interactions | 0.836 | 0.052 | 1.605 | |
| import_tf_mirna_interactions | 0.921 | 0.066 | 2.859 | |
| import_tf_target_interactions | 1.587 | 0.086 | 4.493 | |
| import_transcriptional_interactions | 2.172 | 0.096 | 6.112 | |
| inbiomap_download | 0.001 | 0.000 | 0.000 | |
| inbiomap_raw | 0.000 | 0.000 | 0.001 | |
| interaction_graph | 0.452 | 0.006 | 1.195 | |
| intercell_categories | 0.075 | 0.003 | 0.077 | |
| intercell_consensus_filter | 2.341 | 0.157 | 4.980 | |
| is_ontology_id | 0 | 0 | 0 | |
| kegg_info | 6.580 | 0.401 | 10.191 | |
| kegg_open | 0.003 | 0.003 | 0.009 | |
| kegg_pathway_annotations | 0 | 0 | 0 | |
| kegg_pathway_download | 4.368 | 0.146 | 17.534 | |
| kegg_pathway_list | 0.949 | 0.054 | 2.827 | |
| kegg_pathways_download | 0 | 0 | 0 | |
| kegg_picture | 0.191 | 0.011 | 1.761 | |
| kegg_process | 0.252 | 0.003 | 0.254 | |
| load_db | 0.431 | 0.005 | 0.436 | |
| nichenet_build_model | 0.000 | 0.001 | 0.000 | |
| nichenet_expression_data | 0 | 0 | 0 | |
| nichenet_gr_network | 10.198 | 0.483 | 15.680 | |
| nichenet_gr_network_evex | 87.728 | 1.016 | 88.469 | |
| nichenet_gr_network_harmonizome | 5.577 | 0.403 | 6.585 | |
| nichenet_gr_network_htridb | 0.109 | 0.003 | 0.111 | |
| nichenet_gr_network_omnipath | 11.562 | 0.980 | 14.062 | |
| nichenet_gr_network_pathwaycommons | 13.429 | 0.867 | 14.932 | |
| nichenet_gr_network_regnetwork | 3.075 | 0.227 | 3.945 | |
| nichenet_gr_network_remap | 0.001 | 0.000 | 0.000 | |
| nichenet_gr_network_trrust | 3.067 | 0.071 | 6.755 | |
| nichenet_ligand_activities | 0 | 0 | 0 | |
| nichenet_ligand_target_links | 0.000 | 0.001 | 0.001 | |
| nichenet_ligand_target_matrix | 0 | 0 | 0 | |
| nichenet_lr_network | 301.704 | 2.273 | 309.849 | |
| nichenet_lr_network_guide2pharma | 1.151 | 0.059 | 1.215 | |
| nichenet_lr_network_omnipath | 74.516 | 0.912 | 84.628 | |
| nichenet_lr_network_ramilowski | 0.328 | 0.055 | 0.385 | |
| nichenet_main | 0.000 | 0.000 | 0.001 | |
| nichenet_networks | 128.502 | 1.469 | 133.645 | |
| nichenet_optimization | 0.000 | 0.000 | 0.001 | |
| nichenet_remove_orphan_ligands | 0 | 0 | 0 | |
| nichenet_results_dir | 0.001 | 0.000 | 0.000 | |
| nichenet_signaling_network | 66.513 | 2.758 | 73.182 | |
| nichenet_signaling_network_cpdb | 0.000 | 0.001 | 0.001 | |
| nichenet_signaling_network_evex | 13.356 | 0.656 | 13.369 | |
| nichenet_signaling_network_harmonizome | 0.271 | 0.014 | 0.282 | |
| nichenet_signaling_network_inbiomap | 0.000 | 0.000 | 0.001 | |
| nichenet_signaling_network_omnipath | 11.082 | 0.379 | 11.499 | |
| nichenet_signaling_network_pathwaycommons | 4.529 | 0.014 | 4.555 | |
| nichenet_signaling_network_vinayagam | 0.638 | 0.059 | 0.706 | |
| nichenet_test | 0 | 0 | 0 | |
| nichenet_workarounds | 0.000 | 0.001 | 0.000 | |
| obo_parser | 5.896 | 0.390 | 6.357 | |
| omnipath_cache_autoclean | 0.000 | 0.000 | 0.001 | |
| omnipath_cache_clean | 0.011 | 0.000 | 0.011 | |
| omnipath_cache_clean_db | 0.297 | 0.033 | 0.331 | |
| omnipath_cache_download_ready | 1.029 | 0.059 | 1.152 | |
| omnipath_cache_filter_versions | 0.080 | 0.010 | 0.106 | |
| omnipath_cache_get | 0.047 | 0.007 | 0.054 | |
| omnipath_cache_key | 0.001 | 0.001 | 0.001 | |
| omnipath_cache_latest_or_new | 0.045 | 0.006 | 0.052 | |
| omnipath_cache_load | 0.874 | 0.029 | 2.226 | |
| omnipath_cache_move_in | 0.155 | 0.017 | 0.189 | |
| omnipath_cache_remove | 0.081 | 0.011 | 0.109 | |
| omnipath_cache_save | 0.190 | 0.016 | 0.372 | |
| omnipath_cache_search | 0.001 | 0.000 | 0.001 | |
| omnipath_cache_set_ext | 0.069 | 0.007 | 0.091 | |
| omnipath_cache_update_status | 0.060 | 0.009 | 0.069 | |
| omnipath_cache_wipe | 0 | 0 | 0 | |
| omnipath_get_config_path | 0.001 | 0.000 | 0.001 | |
| omnipath_load_config | 0 | 0 | 0 | |
| omnipath_log | 0 | 0 | 0 | |
| omnipath_logfile | 0.001 | 0.001 | 0.001 | |
| omnipath_msg | 0.011 | 0.000 | 0.012 | |
| omnipath_reset_config | 0 | 0 | 0 | |
| omnipath_save_config | 0.000 | 0.000 | 0.001 | |
| omnipath_set_cachedir | 0.012 | 0.001 | 0.014 | |
| omnipath_set_console_loglevel | 0.002 | 0.001 | 0.003 | |
| omnipath_set_logfile_loglevel | 0.003 | 0.000 | 0.002 | |
| omnipath_set_loglevel | 0.001 | 0.001 | 0.001 | |
| omnipath_show_db | 0.162 | 0.000 | 0.163 | |
| omnipath_unlock_cache_db | 0.001 | 0.000 | 0.001 | |
| ontology_ensure_id | 0.028 | 0.000 | 0.028 | |
| ontology_ensure_name | 0.028 | 0.000 | 0.029 | |
| ontology_name_id | 0.058 | 0.001 | 0.059 | |
| pathwaycommons_download | 11.549 | 0.787 | 13.060 | |
| pivot_annotations | 21.115 | 1.559 | 26.596 | |
| preppi_download | 11.783 | 1.939 | 22.095 | |
| preppi_filter | 10.838 | 1.167 | 7.669 | |
| print_bma_motif_es | 0.332 | 0.039 | 1.701 | |
| print_bma_motif_vs | 0.193 | 0.005 | 0.904 | |
| print_interactions | 3.897 | 0.212 | 8.399 | |
| print_path_es | 0.668 | 0.051 | 2.568 | |
| print_path_vs | 2.695 | 0.080 | 5.866 | |
| pubmed_open | 3.239 | 0.183 | 5.442 | |
| ramilowski_download | 5.781 | 0.684 | 9.449 | |
| regnetwork_directions | 0.297 | 0.023 | 0.631 | |
| regnetwork_download | 1.798 | 0.145 | 2.260 | |
| relations_list_to_table | 0.269 | 0.005 | 0.332 | |
| relations_table_to_graph | 0.169 | 0.000 | 0.171 | |
| relations_table_to_list | 0.597 | 0.054 | 0.682 | |
| remap_dorothea_download | 0.457 | 0.023 | 0.881 | |
| remap_filtered | 0.001 | 0.000 | 0.000 | |
| remap_tf_target_download | 0 | 0 | 0 | |
| resources_colname | 1.035 | 0.086 | 3.123 | |
| simplify_intercell_network | 99.695 | 0.726 | 105.774 | |
| swap_relations | 0.310 | 0.005 | 0.335 | |
| tfcensus_download | 0.821 | 0.022 | 0.863 | |
| translate_ids | 1.643 | 0.126 | 13.408 | |
| trrust_download | 1.255 | 0.063 | 4.720 | |
| uniprot_full_id_mapping_table | 2.081 | 0.101 | 14.158 | |
| uniprot_id_mapping_table | 0.702 | 0.017 | 6.099 | |
| unique_intercell_network | 92.271 | 0.418 | 92.784 | |
| vinayagam_download | 0.888 | 0.099 | 2.713 | |
| walk_ontology_tree | 0.555 | 0.009 | 0.564 | |
| with_extra_attrs | 11.335 | 0.200 | 13.629 | |
| with_references | 0.657 | 0.049 | 2.380 | |
| zenodo_download | 0.001 | 0.000 | 0.001 | |