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This page was generated on 2022-03-18 11:08:12 -0400 (Fri, 18 Mar 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-02-17 r81757) -- "Unsuffered Consequences" 4334
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4097
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-02-17 r81757 ucrt) -- "Unsuffered Consequences" 4083
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-03-02 r81842) -- "Unsuffered Consequences" 4134
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for OGRE on riesling1


To the developers/maintainers of the OGRE package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OGRE.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1324/2090HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
OGRE 0.99.8  (landing page)
Sven Berres
Snapshot Date: 2022-03-17 13:55:23 -0400 (Thu, 17 Mar 2022)
git_url: https://git.bioconductor.org/packages/OGRE
git_branch: master
git_last_commit: 867a785
git_last_commit_date: 2022-03-08 05:34:17 -0400 (Tue, 08 Mar 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: OGRE
Version: 0.99.8
Command: chmod a+r OGRE -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OGRE
StartedAt: 2022-03-17 17:30:00 -0400 (Thu, 17 Mar 2022)
EndedAt: 2022-03-17 17:30:59 -0400 (Thu, 17 Mar 2022)
EllapsedTime: 59.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r OGRE -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data OGRE
###
##############################################################################
##############################################################################


* checking for file 'OGRE/DESCRIPTION' ... OK
* preparing 'OGRE':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'OGRE.Rmd' using rmarkdown
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min


Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    I, expand.grid, unname

Warning: replacing previous import 'GenomicRanges::shift' by 'data.table::shift' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::second' by 'data.table::second' when loading 'OGRE'
Warning: replacing previous import 'S4Vectors::first' by 'data.table::first' when loading 'OGRE'
Quitting from lines 126-127 (OGRE.Rmd) 
Error: processing vignette 'OGRE.Rmd' failed with diagnostics:
No method for subsetting an XMLInternalDocument with numeric
--- failed re-building 'OGRE.Rmd'

SUMMARY: processing the following file failed:
  'OGRE.Rmd'

Error: Vignette re-building failed.
Execution halted