| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:19 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MsCoreUtils package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MsCoreUtils.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1248/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MsCoreUtils 1.8.0 (landing page) RforMassSpectrometry Package Maintainer
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK |  | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | | ||||||||
| Package: MsCoreUtils |
| Version: 1.8.0 |
| Command: rm -rf MsCoreUtils.buildbin-libdir && mkdir MsCoreUtils.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MsCoreUtils_1.8.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MsCoreUtils.buildbin-libdir |
| StartedAt: 2022-10-19 10:44:46 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 10:45:01 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 14.1 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: MsCoreUtils_1.8.0.tgz |
| PackageFileSize: 461.8 KiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf MsCoreUtils.buildbin-libdir && mkdir MsCoreUtils.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh MsCoreUtils_1.8.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R MsCoreUtils.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=MsCoreUtils.buildbin-libdir MsCoreUtils_1.8.0.tar.gz' >>>>>>> * installing *source* package ‘MsCoreUtils’ ... ** using staged installation ** libs clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c closest.c -o closest.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c impNeighbourAvg.c -o impNeighbourAvg.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c join.c -o join.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c localMaxima.c -o localMaxima.o clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rcpp/include' -I/usr/local/include -fPIC -Wall -g -O2 -c which.c -o which.o clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o MsCoreUtils.so closest.o impNeighbourAvg.o init.o join.o localMaxima.o which.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.15-bioc/meat/MsCoreUtils.buildbin-libdir/00LOCK-MsCoreUtils/00new/MsCoreUtils/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MsCoreUtils) >>>>>>> >>>>>>> FIXING LINKS FOR MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so" install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "MsCoreUtils.buildbin-libdir/MsCoreUtils/libs/MsCoreUtils.so"