| Back to Multiple platform build/check report for BioC 3.15 |
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This page was generated on 2022-10-19 13:23:12 -0400 (Wed, 19 Oct 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4386 |
| palomino3 | Windows Server 2022 Datacenter | x64 | 4.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" | 4138 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | 4.2.1 (2022-06-23) -- "Funny-Looking Kid" | 4205 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the MatrixGenerics package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MatrixGenerics.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1084/2140 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MatrixGenerics 1.8.1 (landing page) Peter Hickey
| nebbiolo1 | Linux (Ubuntu 20.04.5 LTS) / x86_64 | OK | OK | OK | |||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |||||||||
| Package: MatrixGenerics |
| Version: 1.8.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MatrixGenerics.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MatrixGenerics_1.8.1.tar.gz |
| StartedAt: 2022-10-19 04:14:00 -0400 (Wed, 19 Oct 2022) |
| EndedAt: 2022-10-19 04:14:49 -0400 (Wed, 19 Oct 2022) |
| EllapsedTime: 49.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MatrixGenerics.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:MatrixGenerics.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings MatrixGenerics_1.8.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.15-bioc/meat/MatrixGenerics.Rcheck’ * using R version 4.2.1 (2022-06-23) * using platform: x86_64-apple-darwin17.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘MatrixGenerics/DESCRIPTION’ ... OK * this is package ‘MatrixGenerics’ version ‘1.8.1’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MatrixGenerics’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... NOTE Unexported objects imported by ':::' calls: ‘methods:::fromNextMethod’ ‘methods:::getGenericFromCall’ See the note in ?`:::` about the use of this operator. There are ::: calls to the package's namespace in its code. A package almost never needs to use ::: for its own objects: ‘.load_next_suggested_package_to_search’ * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.15-bioc/meat/MatrixGenerics.Rcheck/00check.log’ for details.
MatrixGenerics.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL MatrixGenerics ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library’ * installing *source* package ‘MatrixGenerics’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MatrixGenerics)
MatrixGenerics.Rcheck/tests/testthat.Rout
R version 4.2.1 (2022-06-23) -- "Funny-Looking Kid"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
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You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
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Type 'contributors()' for more information and
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Type 'q()' to quit R.
> library(testthat)
> library(MatrixGenerics)
Loading required package: matrixStats
Attaching package: 'MatrixGenerics'
The following objects are masked from 'package:matrixStats':
colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
colWeightedMeans, colWeightedMedians, colWeightedSds,
colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
rowWeightedSds, rowWeightedVars
>
> test_check("MatrixGenerics")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 312 ]
>
> proc.time()
user system elapsed
4.930 0.249 5.163
MatrixGenerics.Rcheck/MatrixGenerics-Ex.timings
| name | user | system | elapsed | |
| rowAlls | 0.004 | 0.000 | 0.005 | |
| rowAnyNAs | 0.002 | 0.000 | 0.002 | |
| rowAnys | 0.002 | 0.000 | 0.002 | |
| rowAvgsPerColSet | 0.003 | 0.001 | 0.003 | |
| rowCollapse | 0.002 | 0.001 | 0.002 | |
| rowCounts | 0.002 | 0.000 | 0.002 | |
| rowCummaxs | 0.002 | 0.000 | 0.003 | |
| rowCummins | 0.001 | 0.000 | 0.002 | |
| rowCumprods | 0.002 | 0.000 | 0.003 | |
| rowCumsums | 0.002 | 0.001 | 0.002 | |
| rowDiffs | 0.002 | 0.001 | 0.002 | |
| rowIQRDiffs | 0.005 | 0.001 | 0.006 | |
| rowIQRs | 0.006 | 0.001 | 0.006 | |
| rowLogSumExps | 0.002 | 0.000 | 0.002 | |
| rowMadDiffs | 0.003 | 0.000 | 0.004 | |
| rowMads | 0.002 | 0.001 | 0.002 | |
| rowMaxs | 0.001 | 0.001 | 0.003 | |
| rowMeans2 | 0.002 | 0.000 | 0.001 | |
| rowMedians | 0.002 | 0.000 | 0.002 | |
| rowMins | 0.001 | 0.001 | 0.002 | |
| rowOrderStats | 0.002 | 0.000 | 0.002 | |
| rowProds | 0.001 | 0.000 | 0.002 | |
| rowQuantiles | 0.010 | 0.001 | 0.010 | |
| rowRanges | 0.002 | 0.000 | 0.002 | |
| rowRanks | 0.002 | 0.001 | 0.002 | |
| rowSdDiffs | 0.003 | 0.001 | 0.004 | |
| rowSds | 0.001 | 0.000 | 0.002 | |
| rowSums2 | 0.002 | 0.000 | 0.002 | |
| rowTabulates | 0.003 | 0.001 | 0.004 | |
| rowVarDiffs | 0.003 | 0.001 | 0.003 | |
| rowVars | 0.002 | 0.000 | 0.002 | |
| rowWeightedMads | 0.003 | 0.000 | 0.004 | |
| rowWeightedMeans | 0.003 | 0.000 | 0.003 | |
| rowWeightedMedians | 0.002 | 0.001 | 0.002 | |
| rowWeightedSds | 0.002 | 0.000 | 0.002 | |
| rowWeightedVars | 0.002 | 0.001 | 0.002 | |