Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-10-19 13:21:46 -0400 (Wed, 19 Oct 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.5 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4386
palomino3Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4138
merida1macOS 10.14.6 Mojavex86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4205
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for MBCB on palomino3


To the developers/maintainers of the MBCB package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MBCB.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1090/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MBCB 1.50.0  (landing page)
Jeff Allen
Snapshot Date: 2022-10-18 13:55:19 -0400 (Tue, 18 Oct 2022)
git_url: https://git.bioconductor.org/packages/MBCB
git_branch: RELEASE_3_15
git_last_commit: dcf87e4
git_last_commit_date: 2022-04-26 11:05:22 -0400 (Tue, 26 Apr 2022)
nebbiolo1Linux (Ubuntu 20.04.5 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: MBCB
Version: 1.50.0
Command: F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MBCB.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MBCB_1.50.0.tar.gz
StartedAt: 2022-10-19 01:34:44 -0400 (Wed, 19 Oct 2022)
EndedAt: 2022-10-19 01:35:19 -0400 (Wed, 19 Oct 2022)
EllapsedTime: 35.0 seconds
RetCode: 0
Status:   OK  
CheckDir: MBCB.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:MBCB.install-out.txt --library=F:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings MBCB_1.50.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.15-bioc/meat/MBCB.Rcheck'
* using R version 4.2.1 (2022-06-23 ucrt)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'MBCB/DESCRIPTION' ... OK
* this is package 'MBCB' version '1.50.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MBCB' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Packages in Depends field not imported from:
  'tcltk' 'tcltk2'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bg.mcmc: no visible binding for global variable 'obsbead'
bg.mcmc: no visible binding for global variable 'obsnc'
esttruesig: no visible binding for global variable 'obsbead'
esttruesig: no visible binding for global variable 'truesignal'
liksig: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsbead'
liksig.all: no visible binding for global variable 'obsnc'
liksig.gamnoise: no visible binding for global variable 'nbead'
liksig.gamnoise: no visible binding for global variable 'sortedObsbead'
liksigall.gamnoise: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'trialNames'
mbcb.correct: no visible binding for '<<-' assignment to 'n.array'
mbcb.correct: no visible binding for '<<-' assignment to 'truesignal'
mbcb.correct: no visible binding for '<<-' assignment to 'truenoise'
mbcb.correct: no visible binding for '<<-' assignment to 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'obsnc'
mbcb.correct: no visible binding for '<<-' assignment to 'nbead'
mbcb.correct: no visible binding for global variable 'n.array'
mbcb.correct: no visible global function definition for
  'setTkProgressBar'
mbcb.correct: no visible binding for global variable 'mbcbPB'
mbcb.correct: no visible binding for global variable 'obsbead'
mbcb.correct: no visible binding for '<<-' assignment to 'nnc'
mbcb.correct: no visible binding for '<<-' assignment to
  'sortedObsbead'
mbcb.correct: no visible binding for global variable 'obsnc'
mbcb.correct: no visible binding for global variable 'nbead'
mbcb.correct: no visible binding for global variable 'nnc'
mbcb.correct: no visible binding for global variable 'sortedObsbead'
mbcb.gui: no visible global function definition for 'tclVar'
mbcb.gui : import.sig: no visible global function definition for
  'tclvalue'
mbcb.gui : import.sig: no visible global function definition for
  'tkgetOpenFile'
mbcb.gui : import.sig: no visible global function definition for
  'tkconfigure'
mbcb.gui : import.sig: no visible global function definition for
  'tclVar'
mbcb.gui : import.negCon: no visible global function definition for
  'tclvalue'
mbcb.gui : import.negCon: no visible global function definition for
  'tkgetOpenFile'
mbcb.gui : import.negCon: no visible global function definition for
  'tkconfigure'
mbcb.gui : import.negCon: no visible global function definition for
  'tclVar'
mbcb.gui : actions.norm: no visible global function definition for
  'tkmessageBox'
mbcb.gui : actions.norm: no visible global function definition for
  'tk2notetab'
mbcb.gui : actions.norm: no visible binding for global variable
  'main.nb'
mbcb.gui : actions.norm: no visible global function definition for
  'tk2notetab.select'
mbcb.gui : actions.norm: no visible global function definition for
  'tclVar'
mbcb.gui : actions.norm: no visible global function definition for
  'tkframe'
mbcb.gui : actions.norm: no visible global function definition for
  'tkcheckbutton'
mbcb.gui : actions.norm: no visible global function definition for
  'tkentry'
mbcb.gui : actions.norm: no visible global function definition for
  'tkbutton'
mbcb.gui : actions.norm: no visible global function definition for
  'tkconfigure'
mbcb.gui : actions.norm: no visible global function definition for
  'tkgrid'
mbcb.gui : actions.norm: no visible global function definition for
  'tklabel'
mbcb.gui : actions.norm : initiate: no visible global function
  definition for 'tclvalue'
mbcb.gui : actions.norm : initiate: no visible global function
  definition for 'tkmessageBox'
mbcb.gui : actions.norm : updateChecks: no visible global function
  definition for 'tclvalue'
mbcb.gui : actions.norm : updateChecks: no visible global function
  definition for 'tkconfigure'
mbcb.gui : normalizeData: no visible global function definition for
  'tk2notetab'
mbcb.gui : normalizeData: no visible binding for global variable
  'main.nb'
mbcb.gui : normalizeData: no visible global function definition for
  'tk2notetab.select'
mbcb.gui : normalizeData: no visible global function definition for
  'tclVar'
mbcb.gui : normalizeData: no visible global function definition for
  'tkframe'
mbcb.gui : normalizeData: no visible global function definition for
  'tkradiobutton'
mbcb.gui : normalizeData: no visible global function definition for
  'tkbutton'
mbcb.gui : normalizeData : <anonymous>: no visible global function
  definition for 'tclvalue'
mbcb.gui : normalizeData: no visible global function definition for
  'tkgrid'
mbcb.gui : normalizeData: no visible global function definition for
  'tklabel'
mbcb.gui : exportData: no visible global function definition for
  'tclVar'
mbcb.gui : exportData: no visible global function definition for
  'tk2notetab'
mbcb.gui : exportData: no visible binding for global variable 'main.nb'
mbcb.gui : exportData: no visible global function definition for
  'tk2notetab.select'
mbcb.gui : exportData: no visible global function definition for
  'tkentry'
mbcb.gui : exportData: no visible global function definition for
  'tkbutton'
mbcb.gui : exportData : <anonymous>: no visible binding for global
  variable 'outFile'
mbcb.gui : exportData : setOut: no visible binding for '<<-' assignment
  to 'outFile'
mbcb.gui : exportData : setOut: no visible global function definition
  for 'tclvalue'
mbcb.gui : exportData : setOut: no visible global function definition
  for 'tkgetSaveFile'
mbcb.gui : exportData : setOut: no visible binding for global variable
  'outFile'
mbcb.gui : exportData : setOut: no visible global function definition
  for 'tkconfigure'
mbcb.gui : exportData : setOut: no visible global function definition
  for 'tclVar'
mbcb.gui : exportData : setDetOut: no visible global function
  definition for 'tclvalue'
mbcb.gui : exportData : setDetOut: no visible global function
  definition for 'tkgetSaveFile'
mbcb.gui : exportData : setDetOut: no visible global function
  definition for 'tkconfigure'
mbcb.gui : exportData : setDetOut: no visible global function
  definition for 'tclVar'
mbcb.gui : exportData: no visible global function definition for
  'tkgrid'
mbcb.gui : exportData: no visible global function definition for
  'tklabel'
mbcb.gui : exportData : eval: no visible global function definition for
  'tkmessageBox'
mbcb.gui : exportData : eval: no visible binding for '<<-' assignment
  to 'mbcbPB'
mbcb.gui : exportData : eval: no visible global function definition for
  'tkProgressBar'
mbcb.gui : exportData : eval: no visible global function definition for
  'tkconfigure'
mbcb.gui : exportData : eval: no visible global function definition for
  'tclvalue'
mbcb.gui : exportData : eval: no visible global function definition for
  'tkdestroy'
mbcb.gui : help.about: no visible global function definition for
  'tkmessageBox'
mbcb.gui : removeItem: no visible global function definition for
  'tkcurselection'
mbcb.gui : removeItem: no visible binding for global variable
  'importTab.f.dataList'
mbcb.gui : removeItem: no visible global function definition for
  'tkdelete'
mbcb.gui : Try: no visible global function definition for
  'tkmessageBox'
mbcb.gui: no visible global function definition for 'tktoplevel'
mbcb.gui: no visible global function definition for 'tkwm.resizable'
mbcb.gui: no visible global function definition for 'tkfocus'
mbcb.gui: no visible binding for '<<-' assignment to 'main.nb'
mbcb.gui: no visible global function definition for 'tk2notebook'
mbcb.gui: no visible global function definition for 'tk2notetab'
mbcb.gui: no visible binding for global variable 'main.nb'
mbcb.gui: no visible global function definition for 'tkframe'
mbcb.gui: no visible global function definition for 'tklabel'
mbcb.gui: no visible global function definition for 'tkentry'
mbcb.gui: no visible global function definition for 'tkbutton'
mbcb.gui: no visible global function definition for 'tkgrid'
mbcb.main: no visible binding for global variable 'n.array'
mbcb.main: no visible binding for '<<-' assignment to 'bgCorrSig'
mbcb.main: no visible binding for global variable 'bgCorrSig'
mbcb.parseFile: no visible global function definition for
  'setTkProgressBar'
mbcb.parseFile: no visible binding for global variable 'mbcbPB'
mbcb.parseFile: no visible binding for '<<-' assignment to 'types'
mbcb.parseFile: no visible binding for global variable 'types'
mbcb.parseFile: no visible binding for '<<-' assignment to 'sig2'
mbcb.parseFile: no visible binding for global variable 'sig2'
printMBCBOutput: no visible binding for '<<-' assignment to 'dete'
printMBCBOutput: no visible global function definition for
  'setTkProgressBar'
printMBCBOutput: no visible binding for global variable 'mbcbPB'
printMBCBOutput: no visible binding for global variable 'trialNames'
truesig: no visible binding for global variable 'obsbead'
Undefined global functions or variables:
  bgCorrSig importTab.f.dataList main.nb mbcbPB n.array nbead nnc
  obsbead obsnc outFile setTkProgressBar sig2 sortedObsbead tclVar
  tclvalue tk2notebook tk2notetab tk2notetab.select tkProgressBar
  tkbutton tkcheckbutton tkconfigure tkcurselection tkdelete tkdestroy
  tkentry tkfocus tkframe tkgetOpenFile tkgetSaveFile tkgrid tklabel
  tkmessageBox tkradiobutton tktoplevel tkwm.resizable trialNames
  truesignal types
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  'F:/biocbuild/bbs-3.15-bioc/meat/MBCB.Rcheck/00check.log'
for details.

Installation output

MBCB.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL MBCB
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'MBCB' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MBCB)

Tests output

Example timings

MBCB.Rcheck/MBCB-Ex.timings

nameusersystemelapsed
bg.mcmc0.590.080.67
bg.rma0.020.030.05
mbcb.correct0.050.020.07
mbcb.gui0.030.000.04
mbcb.main0.020.030.05
mbcb.parseFile0.040.000.05